0548004ba6d14450ed2431a2e134c5c3fa882fd3
hiram
  Thu Apr 5 16:31:59 2018 -0700
change cse address to soe address refs #18874

diff --git src/userApps/fetchKentSource.sh src/userApps/fetchKentSource.sh
index ad74f74..6f1f297 100755
--- src/userApps/fetchKentSource.sh
+++ src/userApps/fetchKentSource.sh
@@ -15,31 +15,31 @@
 # export branch="HEAD"
 
 # These selective git archive commands only work up to a certain size
 # of fetched source (number of arguments), hence the multiple set of
 # individual fetches to get all the parts
 
 rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip part5Src.zip
 export partNumber=1
 export ofN="of 5"
 
 # this util changed from being in a directory to being a script
 # the extract can't overwrite the directory with a file
 rm -fr kent/src/utils/uniprotLift
 
 echo "fetch kent source part ${partNumber} ${ofN}" 1>&2
-git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \
+git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \
 --prefix=kent/ ${branch} \
 src/machTest.sh \
 src/checkUmask.sh \
 src/ameme \
 src/aladdin \
 src/blat \
 src/dnaDust \
 src/fuse \
 src/gfClient \
 src/gfServer \
 src/index \
 src/makefile \
 src/meta \
 src/parasol \
 src/primeMate \
@@ -81,31 +81,31 @@
 src/hg/fakeOut \
 src/hg/featureBits \
 src/hg/ffaToFa \
 src/hg/fishClones \
 src/hg/fqToQa \
 src/hg/fqToQac \
 src/hg/fragPart \
 src/hg/gbGetEntries \
 src/hg/gbOneAcc > part${partNumber}Src.zip
 
 unzip -o -q part${partNumber}Src.zip
 
 ((partNumber++))
 echo "fetch kent source part ${partNumber} ${ofN}" 1>&2
 
-git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \
+git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \
 --prefix=kent/ ${branch} \
 src/hg/gbToFaRa \
 src/hg/geneBounds \
 src/hg/genePredHisto \
 src/hg/genePredSingleCover \
 src/hg/genePredToBed \
 src/hg/genePredToFakePsl \
 src/hg/genePredToGtf \
 src/hg/genePredToMafFrames \
 src/hg/getFeatDna \
 src/hg/getRna \
 src/hg/getRnaPred \
 src/hg/gpStats \
 src/hg/gpToGtf \
 src/hg/gpcrParser \
@@ -144,31 +144,31 @@
 src/hg/pslCat \
 src/hg/pslCheck \
 src/hg/pslCoverage \
 src/hg/pslCDnaFilter \
 src/hg/pslPretty \
 src/hg/pslReps \
 src/hg/pslSort \
 src/hg/pslSomeRecords \
 src/hg/pslDropOverlap > part${partNumber}Src.zip
 
 unzip -o -q part${partNumber}Src.zip
 
 ((partNumber++))
 echo "fetch kent source part ${partNumber} ${ofN}" 1>&2
 
-git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \
+git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \
 --prefix=kent/ ${branch} \
 src/hg/pslFilter \
 src/hg/pslFilterPrimers \
 src/hg/pslGlue \
 src/hg/pslHisto \
 src/hg/pslHitPercent \
 src/hg/pslIntronsOnly \
 src/hg/pslPairs \
 src/hg/pslPartition \
 src/hg/pslQuickFilter \
 src/hg/pslRecalcMatch \
 src/hg/pslSelect \
 src/hg/pslSimp \
 src/hg/pslSortAcc \
 src/hg/pslSplitOnTarget \
@@ -206,31 +206,31 @@
 src/hg/updateStsInfo \
 src/hg/xmlCat \
 src/hg/xmlToSql \
 src/hg/hgTables \
 src/hg/near \
 src/hg/pslDiff \
 src/hg/sage \
 src/hg/gigAssembler/checkAgpAndFa \
 src/hg/genePredCheck > part${partNumber}Src.zip
 
 unzip -o -q part${partNumber}Src.zip
 
 ((partNumber++))
 echo "fetch kent source part ${partNumber} ${ofN}" 1>&2
 
-git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \
+git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \
 --prefix=kent/ ${branch} \
 src/hg/makeDb/makefile \
 src/hg/makeDb/hgAar \
 src/hg/makeDb/hgAddLiftOverChain \
 src/hg/makeDb/hgBbiDbLink \
 src/hg/makeDb/hgClonePos \
 src/hg/makeDb/hgCountAlign \
 src/hg/makeDb/hgCtgPos \
 src/hg/makeDb/hgDeleteChrom \
 src/hg/makeDb/hgExperiment \
 src/hg/makeDb/hgExtFileCheck \
 src/hg/makeDb/hgFakeAgp \
 src/hg/makeDb/hgFindSpec \
 src/hg/makeDb/hgGeneBands \
 src/hg/makeDb/hgGenericMicroarray \
@@ -271,30 +271,30 @@
 src/hg/makeDb/hgTpf \
 src/hg/makeDb/hgTraceInfo \
 src/hg/makeDb/hgTrackDb \
 src/hg/makeDb/hgWaba \
 src/hg/makeDb/ldHgGene \
 src/hg/makeDb/hgMrnaRefseq \
 src/hg/makeDb/schema \
 src/hg/makeDb/tfbsConsLoc \
 src/hg/makeDb/tfbsConsSort > part${partNumber}Src.zip
 
 unzip -o -q part${partNumber}Src.zip
 
 ((partNumber++))
 echo "fetch kent source part ${partNumber} ${ofN}" 1>&2
 
-git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \
+git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \
 --prefix=kent/ ${branch} \
 src/parasol \
 src/htslib \
 src/hg/pslToChain \
 src/hg/makeDb/outside \
 src/hg/makeDb/trackDbRaFormat \
 src/hg/makeDb/trackDbPatch \
 src/hg/mouseStuff \
 src/hg/ratStuff \
 src/hg/nci60 \
 src/hg/visiGene/knownToVisiGene \
 src/hg/visiGene/hgVisiGene > part${partNumber}Src.zip
 
 unzip -o -q part${partNumber}Src.zip