All File Changes

v364_base to v365_preview (2018-04-16 to 2018-04-23) v365

• confs/rr.hg.conf
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    0fe94780bdaf23f4cade90e2e02e4c14cbb02376 Sun Apr 22 01:11:28 2018 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c
  • lines changed 5, context: html, text, full: html, text
    d102cec7b6edb5dab1f396186431b84087e56ca0 Fri Apr 20 20:32:48 2018 -0700
    Fix cirm public downloads to not require login/auth/tokens. cdwWebBrowse and cdwGetFile affected. fixes #21315
• src/hg/cirm/cdw/cdwJob/cdwJob.c
  • lines changed 1, context: html, text, full: html, text
    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 5, context: html, text, full: html, text
    afd883a028cfba1957391837c3cb301610b468ce Fri Apr 20 16:04:54 2018 -0700
    Removing restriction on CIRM that one must be logged in to use Download All. This is no longer restricted because the only way to get the files is via the public site for which all is public, and the private site which requires a BASIC AUTH login in order to access anything at all -- thus they have a login or they could not even run the CGI.
  • lines changed 30, context: html, text, full: html, text
    d102cec7b6edb5dab1f396186431b84087e56ca0 Fri Apr 20 20:32:48 2018 -0700
    Fix cirm public downloads to not require login/auth/tokens. cdwWebBrowse and cdwGetFile affected. fixes #21315
  • lines changed 14, context: html, text, full: html, text
    3642e34cc21d2df3492da28bcae40f219273a612 Fri Apr 20 21:30:49 2018 -0700
    oops, adding back some checks for safety. No so much needed on cirmdcm or cirm public, but check will be handy for vhosts. Basically, the download mechanism for non-public relies on tokens, which in turn requires user to be logged in.
• src/hg/cirm/cdw/makefile
  • lines changed 12, context: html, text, full: html, text
    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/hg/cirm/gateway/htdocs/cescg/cescgOrg.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/cescg/cescgPeople.html
  • lines changed 2, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/cescg/cescgPubs.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/help/cirmBasics.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/help/cirmFAQ.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/inc/header.html
  • lines changed 6, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/index.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/projects.html
  • lines changed 354, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/cirm/gateway/htdocs/style/cirmStyle.css
  • lines changed 114, context: html, text, full: html, text
    e41809d2114a53f28abf6c6a881e6892d2f49937 Sat Apr 21 09:51:12 2018 -0700
    Added a new generic background-color classes. Added generic text color classes. Added some new classes to account for potential new table styling for File Browser. no redmine
• src/hg/cirm/gateway/htdocs/tools.html
  • lines changed 1, context: html, text, full: html, text
    623420ddf30d9686f32bf37913a403124986f934 Sat Apr 21 09:54:41 2018 -0700
    Changing title bars to use new background classes. Fixing minor spelling mistake on People page. Changing Projects page to use new text coloring classes. Changing header to use new background classes as well. no redmine
• src/hg/hgCollection/hgCollection.c
  • lines changed 7, context: html, text, full: html, text
    5b1c3cb6e7ce60e71edfb9e7237eca2fe7a02910 Wed Apr 18 15:45:25 2018 -0700
    fixed bug #21294 by re-introducing some code that checks to see if a name has already been used before appending some uniqueifying text
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 1, context: html, text, full: html, text
    0fee4ec2810fe3416b43080c9ee23dc77eb237aa Wed Apr 18 14:23:05 2018 -0700
    Short Match track: don't use TATAWAAR as default because it's computationally expensive. Instead, have no default sequence but list a couple examples including TATAWAAR. refs #20969
• src/hg/hgTracks/gencodeTracks.c
  • lines changed 3, context: html, text, full: html, text
    24bd74826d0748ee6a37622611ff380b4eb1e9b0 Fri Apr 20 18:40:01 2018 -0700
    fix segv in generating label for gencode 2-way pseudo and poly-A tracks. Addresses #21266 and most likely #21298
• src/hg/htdocs/gtex/gtexBodyMap.html
  • lines changed 19, context: html, text, full: html, text
    e69793403b5ac6b9a6a1e714c931b967db082f97 Wed Aug 2 15:46:29 2017 -0700
    Create HTML page for GTEx body map. This will be linked on to various GTEx tracks and resources in the browser. refs #18628
  • lines changed 1, context: html, text, full: html, text
    b6262b51878ac8c659c227eddf75ec835d4977ce Tue Apr 17 14:57:45 2018 -0700
    Remove debugging. refs #21295
  • lines changed 18, context: html, text, full: html, text
    90ea2a0be9a172a8c83c138691fbcbb730993cea Tue Apr 17 14:58:37 2018 -0700
    Clean up. refs #21295
• src/hg/htdocs/gtexBodyMap.html
  • lines changed 18, context: html, text, full: html, text
    90ea2a0be9a172a8c83c138691fbcbb730993cea Tue Apr 17 14:58:37 2018 -0700
    Clean up. refs #21295
  • lines changed 1, context: html, text, full: html, text
    8b8e1367072135f4d386fcf7266e5103d2e84e90 Tue Apr 17 15:01:13 2018 -0700
    Fix root after moving file. refs #21295
  • lines changed 1, context: html, text, full: html, text
    bf49b273f27dfaf72c941771f68a4286a0eb226e Tue Apr 17 15:18:27 2018 -0700
    Adjust size of body map on HTML page. refs #21295
• src/hg/htdocs/images/gtexBodyMapPage.svg
  • lines changed 1900, context: html, text, full: html, text
    bf49b273f27dfaf72c941771f68a4286a0eb226e Tue Apr 17 15:18:27 2018 -0700
    Adjust size of body map on HTML page. refs #21295
• src/hg/htdocs/staff.html
  • lines changed 2, context: html, text, full: html, text
    258a0ea2fba8adf287e39a4d7bea0070a6c1e6a1 Mon Apr 16 11:59:36 2018 -0700
    commenting out SAB for now
• src/hg/inc/hui.h
  • lines changed 1, context: html, text, full: html, text
    0fee4ec2810fe3416b43080c9ee23dc77eb237aa Wed Apr 18 14:23:05 2018 -0700
    Short Match track: don't use TATAWAAR as default because it's computationally expensive. Instead, have no default sequence but list a couple examples including TATAWAAR. refs #20969
• src/hg/lib/jksql.c
  • lines changed 1, context: html, text, full: html, text
    b03153bfa35c67ec9c98e1ab87e22733f0195ab5 Fri Apr 20 12:07:34 2018 -0700
    fixed typo in comment in jksql
• src/hg/makeDb/doc/hg19.txt
  • lines changed 28, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/doc/proteins/180404.txt
  • lines changed 200, context: html, text, full: html, text
    6b764f47d409d5ecd9813e0b3e4289c080167082 Thu Apr 19 20:24:07 2018 -0700
    uniProt and proteins database and utility for mm10 ucsc genes build
• src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes14.csh
  • lines changed 3, context: html, text, full: html, text
    88ad7bb93b6f132899e1cc56ac3f69b124d32e48 Sat Apr 21 09:40:25 2018 -0700
    make a test version of Pfam track without TC filtering
• src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh
  • lines changed 3, context: html, text, full: html, text
    88ad7bb93b6f132899e1cc56ac3f69b124d32e48 Sat Apr 21 09:40:25 2018 -0700
    make a test version of Pfam track without TC filtering
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes17.csh
  • lines changed 213, context: html, text, full: html, text
    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes17.csh.00
  • lines changed 1655, context: html, text, full: html, text
    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/makeDb/doc/uniProt/sp180404.txt
  • lines changed 69, context: html, text, full: html, text
    6b764f47d409d5ecd9813e0b3e4289c080167082 Thu Apr 19 20:24:07 2018 -0700
    uniProt and proteins database and utility for mm10 ucsc genes build
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 2, context: html, text, full: html, text
    4e0fd029cf2bdfd6ad04eda02260c4ba68044464 Mon Apr 16 13:28:13 2018 -0700
    Fixing a couple paths for grcHhh38 genbank, thanks Braney.
• src/hg/makeDb/genbank/etc/ignore.idx
  • lines changed 111, context: html, text, full: html, text
    79d582d68e04b0b5307a4f96b40e8ca22c20c910 Thu Apr 19 20:31:09 2018 -0700
    more things to ignore in genbank
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    6cf93d53f39124cee683b303555ec71846d99cc1 Sat Apr 21 09:48:42 2018 -0700
    add Angie's test assembly to the genbank proces
• src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
  • lines changed 7, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 5, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/schema/all.joiner
  • lines changed 86, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
  • lines changed 7, context: html, text, full: html, text
    333ce7ffd4420b76622e9fff7e06e58fdedd8292 Sat Apr 21 09:47:54 2018 -0700
    all.joiner changes for mm10 ucsc genes
• src/hg/makeDb/trackDb/cgapSage.html
  • lines changed 2, context: html, text, full: html, text
    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 5, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.ra
  • lines changed 2, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.html
  • lines changed 32, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.ra
  • lines changed 222, context: html, text, full: html, text
    3450af84becb3c4e05b2b446c2e8f6b412fb1aa1 Wed Apr 18 12:09:33 2018 -0700
    import of GENCODE V28lift37
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    a29607f6f67b88fcf5e1f841ea3ff49bbe0ad5ec Wed Apr 18 11:47:43 2018 -0700
    Adding oviAri4 to build, refs #17247
• src/hg/makeDb/trackDb/mouse/affyGnfU74A.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/affyGnfU74B.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/affyGnfU74C.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/affyMOE430.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/affyU74.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/gnfAtlas2.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/igtc.html
  • lines changed 8, context: html, text, full: html, text
    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/jaxPhenotype.html
  • lines changed 33, context: html, text, full: html, text
    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/jaxRepTranscript.html
  • lines changed 1, context: html, text, full: html, text
    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/makeDb/trackDb/mouse/mm8/NIAGene.html
  • lines changed 4, context: html, text, full: html, text
    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm8/broadChromatinChIPSeq.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm8/knownGene.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm8/miRNA.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm8/multiz17way.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm8/wssdCoverage.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/phastConsElements17way.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/regPotential7X.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/rinnSex.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/sheep/oviAri4/description.html
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    a29607f6f67b88fcf5e1f841ea3ff49bbe0ad5ec Wed Apr 18 11:47:43 2018 -0700
    Adding oviAri4 to build, refs #17247
• src/hg/makeDb/trackDb/sheep/oviAri4/gap.html
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    a29607f6f67b88fcf5e1f841ea3ff49bbe0ad5ec Wed Apr 18 11:47:43 2018 -0700
    Adding oviAri4 to build, refs #17247
• src/hg/makeDb/trackDb/sheep/oviAri4/gold.html
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    a29607f6f67b88fcf5e1f841ea3ff49bbe0ad5ec Wed Apr 18 11:47:43 2018 -0700
    Adding oviAri4 to build, refs #17247
• src/hg/makeDb/trackDb/sheep/oviAri4/trackDb.ra
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    a29607f6f67b88fcf5e1f841ea3ff49bbe0ad5ec Wed Apr 18 11:47:43 2018 -0700
    Adding oviAri4 to build, refs #17247
• src/hg/makeDb/trackDb/sibGene.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/sibTxGraph.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/snp126.html
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    ab53f2c5f214f00dd4c52d691221815026acda7a Fri Apr 20 10:10:26 2018 -0700
    Updating redirected links for mm8, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/chainSelf.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/ecoresHg17.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/gaze.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/mrna.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/netSelf.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/tetNig1/cytokines.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/tetNig1/gold.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tetraodon/tetNig1/hoxGenes.html
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    d68ce33b9e09bcbbfba0eea2eef4909d4d7d59a3 Tue Apr 17 10:35:51 2018 -0700
    Updating redirected links for tetNig1, uiLinks cronjob.
• src/hg/makeDb/trackDb/xenTro/intronEst.html
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    e0c3fbbad62eebce275e92c0bd75d28234f12648 Tue Apr 17 10:46:39 2018 -0700
    Updating redirected links for xenTro3, uiLinks cronjob.
• src/hg/makeDb/trackDb/xenTro/mgcFullMrna.html
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    e0c3fbbad62eebce275e92c0bd75d28234f12648 Tue Apr 17 10:46:39 2018 -0700
    Updating redirected links for xenTro3, uiLinks cronjob.
• src/hg/makeDb/trackDb/xenTro/xenTro3/cons9way.html
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    e0c3fbbad62eebce275e92c0bd75d28234f12648 Tue Apr 17 10:46:39 2018 -0700
    Updating redirected links for xenTro3, uiLinks cronjob.
• src/hg/snp/snpLoad/snpNcbiToUcsc.c
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    238b07f3be897949fd8dfeb14152d61eb345c67d Wed Apr 18 14:29:47 2018 -0700
    In anticipation of incorporating _fix patches into our dbs, include the _fix suffix when checking chrom equivalence.
• src/hg/txGene/txGeneAlias/txGeneAlias.c
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    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/txGene/txGeneFromBed/txGeneFromBed.c
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    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/txGene/txGeneXref/txGeneXref.c
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    9405731914c2e4957961ea4c611986c3c3cb2e77 Sat Apr 21 09:46:46 2018 -0700
    changes for mm10 ucsc genes
• src/hg/utils/automation/makeDownloads.pl
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    94d4a9d22e6085d553e32812734186455343c6ef Mon Apr 16 16:22:05 2018 -0700
    Add ucsc/$db.agp as a possible location of agp.
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    1d5b3132755b1950501293196e6d017f0265732c Tue Apr 17 12:33:04 2018 -0700
    &printSomeHaveConditions() needs to be invoked with its $fh argument.
• src/hg/utils/stripPatentIds/makefile
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    6b764f47d409d5ecd9813e0b3e4289c080167082 Thu Apr 19 20:24:07 2018 -0700
    uniProt and proteins database and utility for mm10 ucsc genes build
• src/hg/utils/stripPatentIds/stripPatentIds.c
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    6b764f47d409d5ecd9813e0b3e4289c080167082 Thu Apr 19 20:24:07 2018 -0700
    uniProt and proteins database and utility for mm10 ucsc genes build
• src/tagStorm/jsonToTagStorm/tests/makefile
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/makefile
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
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    a8ea1a2efa691fd14397878221c5205710ed2f5a Thu Apr 19 12:54:08 2018 -0700
    oops, was breaking utils build when accidentally lost our default target.
• src/tagStorm/tagStormDeleteTags/tests/makefile
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/tagStormFromTab/expected.tags
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/tagStormFromTab/makefile
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/tagStormInfo/tests/expected.schema
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/tagStormReformat/tests/expected.files
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/tagStorm/tagStormReformat/tests/expected.tab
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    1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700
    makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
• src/utils/apacheLogParse
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    0152538cb630db0a08d41756a12f61091ff4fcc7 Wed Apr 18 11:53:21 2018 -0700
    little apacheLogParse update
• src/utils/qa/weeklybld/buildEnv.csh
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    6883fa6a9bf1fc3527fbb8c18fda8ee3976b8150 Mon Apr 23 10:00:09 2018 -0700
    v365 preview1 refs #21221

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