Commits for angie

v364_base to v365_preview (2018-04-16 to 2018-04-23) v365

4e0fd029cf2bdfd6ad04eda02260c4ba68044464 Mon Apr 16 13:28:13 2018 -0700

• Fixing a couple paths for grcHhh38 genbank, thanks Braney.
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text

94d4a9d22e6085d553e32812734186455343c6ef Mon Apr 16 16:22:05 2018 -0700

• Add ucsc/$db.agp as a possible location of agp.
  • src/hg/utils/automation/makeDownloads.pl - lines changed 1, context: html, text, full: html, text

1d5b3132755b1950501293196e6d017f0265732c Tue Apr 17 12:33:04 2018 -0700

• &printSomeHaveConditions() needs to be invoked with its $fh argument.
  • src/hg/utils/automation/makeDownloads.pl - lines changed 2, context: html, text, full: html, text

0fee4ec2810fe3416b43080c9ee23dc77eb237aa Wed Apr 18 14:23:05 2018 -0700

• Short Match track: don't use TATAWAAR as default because it's computationally expensive. Instead, have no default sequence but list a couple examples including TATAWAAR. refs #20969
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 1, context: html, text, full: html, text

238b07f3be897949fd8dfeb14152d61eb345c67d Wed Apr 18 14:29:47 2018 -0700

• In anticipation of incorporating _fix patches into our dbs, include the _fix suffix when checking chrom equivalence.
  • src/hg/snp/snpLoad/snpNcbiToUcsc.c - lines changed 1, context: html, text, full: html, text