Commits for galt

v364_base to v365_preview (2018-04-16 to 2018-04-23) v365

1c023fa8eac92f7133dcd444c50283eaeea9fd65 Wed Apr 18 17:13:45 2018 -0700

• makefile cleanup. Several tagStorm utilities are needed by cdw web works. Also cleaned up make test and make clean targets for the tagStorm makefiles, replaced several manual lists with a single easy to maintain list. fixed missing or incorrect "expected" output.
  • src/hg/cirm/cdw/cdwJob/cdwJob.c - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/makefile - lines changed 12, context: html, text, full: html, text
  • src/tagStorm/jsonToTagStorm/tests/makefile - lines changed 6, context: html, text, full: html, text
  • src/tagStorm/makefile - lines changed 92, context: html, text, full: html, text
  • src/tagStorm/tagStormDeleteTags/tests/makefile - lines changed 7, context: html, text, full: html, text
  • src/tagStorm/tagStormFromTab/expected.tags - lines changed 4, context: html, text, full: html, text
  • src/tagStorm/tagStormFromTab/makefile - lines changed 4, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tests/expected.schema - lines changed 2, context: html, text, full: html, text
  • src/tagStorm/tagStormReformat/tests/expected.files - lines changed 25, context: html, text, full: html, text
  • src/tagStorm/tagStormReformat/tests/expected.tab - lines changed 35, context: html, text, full: html, text

a8ea1a2efa691fd14397878221c5205710ed2f5a Thu Apr 19 12:54:08 2018 -0700

• oops, was breaking utils build when accidentally lost our default target.
  • src/tagStorm/makefile - lines changed 15, context: html, text, full: html, text

b03153bfa35c67ec9c98e1ab87e22733f0195ab5 Fri Apr 20 12:07:34 2018 -0700

• fixed typo in comment in jksql
  • src/hg/lib/jksql.c - lines changed 1, context: html, text, full: html, text

afd883a028cfba1957391837c3cb301610b468ce Fri Apr 20 16:04:54 2018 -0700

• Removing restriction on CIRM that one must be logged in to use Download All. This is no longer restricted because the only way to get the files is via the public site for which all is public, and the private site which requires a BASIC AUTH login in order to access anything at all -- thus they have a login or they could not even run the CGI.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 5, context: html, text, full: html, text

d102cec7b6edb5dab1f396186431b84087e56ca0 Fri Apr 20 20:32:48 2018 -0700

• Fix cirm public downloads to not require login/auth/tokens. cdwWebBrowse and cdwGetFile affected. fixes #21315
  • src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c - lines changed 5, context: html, text, full: html, text
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 30, context: html, text, full: html, text

3642e34cc21d2df3492da28bcae40f219273a612 Fri Apr 20 21:30:49 2018 -0700

• oops, adding back some checks for safety. No so much needed on cirmdcm or cirm public, but check will be handy for vhosts. Basically, the download mechanism for non-public relies on tokens, which in turn requires user to be logged in.
  • src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c - lines changed 14, context: html, text, full: html, text