Commits for angie

v365_preview to v365_preview2 (2018-04-23 to 2018-04-30) v365

5756dec7a00c540d5a1b5a9806ee7c598a07bde4 Tue Apr 17 12:37:08 2018 -0700

• snp151* tracks (dbSNP b151) for hg19 and hg38. refs #21010
  • src/hg/makeDb/doc/hg19.txt - lines changed 94, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/variation.txt - lines changed 110, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151.html - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151.shared.html - lines changed 484, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151Common.html - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151Flagged.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/snp151Mult.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 119, context: html, text, full: html, text

a007cb8656504258c3815df9175f6cd37f1eba6c Thu Apr 26 11:04:08 2018 -0700

• Update doDbSnp.pl tryToMakeLiftUpFromNcbiAssemblyReportFile to use latest _alt-style naming and also support _fix.
  • src/hg/utils/automation/doDbSnp.pl - lines changed 21, context: html, text, full: html, text

2452b8280ae2188283a2d158eebd8bc17a8ebdf5 Fri Apr 27 10:14:19 2018 -0700

• TB GFF output was assuming mysql db, failed on assembly hubs. refs #21353
  • src/hg/hgTables/gffOut.c - lines changed 12, context: html, text, full: html, text

6c50cb8c924b5d9c95a898e653718596793a8011 Fri Apr 27 10:21:11 2018 -0700

• Support track hub names that contain '.' by first checking for '.hub_' in db.table.field strings. refs #21353
  • src/hg/hgTables/filterFields.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/joiner.c - lines changed 2, context: html, text, full: html, text