All File Changes

v366_preview2 to v366_base (2018-05-21 to 2018-05-29) v366

• src/hg/cirm/cdw/README
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    0409f25c99f720520e4fb83ef43847eca6647119 Wed May 23 13:45:55 2018 -0700
    CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed.
• src/hg/cirm/cdw/cdwBackup/makefile
  • lines changed 6, context: html, text, full: html, text
    61a2741ef2ef0a52b1be818f8edd319919ea2526 Wed May 23 19:37:59 2018 -0700
    CIRM adding script to update the cdw full-text index
• src/hg/cirm/cdw/cdwChangeAccess/cdwChangeAccess.c
  • lines changed 1, context: html, text, full: html, text
    0409f25c99f720520e4fb83ef43847eca6647119 Wed May 23 13:45:55 2018 -0700
    CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed.
• src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c
  • lines changed 88, context: html, text, full: html, text
    0409f25c99f720520e4fb83ef43847eca6647119 Wed May 23 13:45:55 2018 -0700
    CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed.
• src/hg/cirm/cdw/cdwUpdateIx/cdwUpdateIx
  • lines changed 22, context: html, text, full: html, text
    61a2741ef2ef0a52b1be818f8edd319919ea2526 Wed May 23 19:37:59 2018 -0700
    CIRM adding script to update the cdw full-text index
• src/hg/cirm/cdw/cdwUpdateIx/makefile
  • lines changed 14, context: html, text, full: html, text
    61a2741ef2ef0a52b1be818f8edd319919ea2526 Wed May 23 19:37:59 2018 -0700
    CIRM adding script to update the cdw full-text index
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 19, context: html, text, full: html, text
    0409f25c99f720520e4fb83ef43847eca6647119 Wed May 23 13:45:55 2018 -0700
    CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed.
• src/hg/cirm/cdw/makefile
  • lines changed 1, context: html, text, full: html, text
    61a2741ef2ef0a52b1be818f8edd319919ea2526 Wed May 23 19:37:59 2018 -0700
    CIRM adding script to update the cdw full-text index
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    edd136db42f9bc008bdb01ab540cb47ea0e162dc Wed May 23 14:44:56 2018 -0700
    fix problem with composites acting like multiwigs in multi-exon mode
• src/hg/hgc/hgc.c
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    c94639dc8b59278cc5588f5291f1fccc373aeb49 Fri May 25 16:08:42 2018 -0700
    get rid of hardcoded url setting in printCustomUrlWithLabel, fixes miRna/snoRna track, refs #21516
• src/hg/htdocs/admin/maintenance.html
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    341a986c63ca7ad4efa807925b71111b07c99468 Wed May 23 14:01:45 2018 -0700
    removed third-party mirror sites
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    6f98552b7e3a4e1cd6b905283939ef3f037bbd8f Wed May 23 15:08:04 2018 -0700
    Moving maintenance.html down a level at request from Ann/Jorge to make it easier for their script and for pushes.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 29, context: html, text, full: html, text
    ad3b8e350f69dc35d47ff9bd83d78faa2e5b5530 Wed May 23 11:11:20 2018 -0700
    Announcing the updated UCSC Genes v17 track for mm10, refs #19786
• src/hg/htdocs/inc/gbFooter.html
  • lines changed 1, context: html, text, full: html, text
    739713aae362bc703de1ed897368428e319688fd Wed May 23 15:48:15 2018 -0700
    Correct date for all the various footers, refs #21476
• src/hg/htdocs/inc/gbFooterHardcoded.html
  • lines changed 1, context: html, text, full: html, text
    739713aae362bc703de1ed897368428e319688fd Wed May 23 15:48:15 2018 -0700
    Correct date for all the various footers, refs #21476
• src/hg/htdocs/inc/gbsFooter.html
  • lines changed 1, context: html, text, full: html, text
    739713aae362bc703de1ed897368428e319688fd Wed May 23 15:48:15 2018 -0700
    Correct date for all the various footers, refs #21476
• src/hg/htdocs/inc/jWestFooter.html
  • lines changed 1, context: html, text, full: html, text
    739713aae362bc703de1ed897368428e319688fd Wed May 23 15:48:15 2018 -0700
    Correct date for all the various footers, refs #21476
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    ad3b8e350f69dc35d47ff9bd83d78faa2e5b5530 Wed May 23 11:11:20 2018 -0700
    Announcing the updated UCSC Genes v17 track for mm10, refs #19786
• src/hg/htdocs/maintenance.html
  • lines changed 39, context: html, text, full: html, text
    6f98552b7e3a4e1cd6b905283939ef3f037bbd8f Wed May 23 15:08:04 2018 -0700
    Moving maintenance.html down a level at request from Ann/Jorge to make it easier for their script and for pushes.
• src/hg/htdocs/mirror.html
  • lines changed 45, context: html, text, full: html, text
    f7048894b9117c1f5299944e82d44261347b1142 Wed May 23 13:57:08 2018 -0700
    removed third-party mirror sites
• src/hg/inc/versionInfo.h
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    34b031125c38ca2905e347369c3242d66699ea38 Tue May 29 10:07:19 2018 -0700
    New version number v366
• src/hg/lib/tablesTables.c
  • lines changed 5, context: html, text, full: html, text
    0409f25c99f720520e4fb83ef43847eca6647119 Wed May 23 13:45:55 2018 -0700
    CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed.
• src/hg/lib/trackHub.c
  • lines changed 2, context: html, text, full: html, text
    32fd550dc69060f46046d3f360e6ace010945a99 Fri May 25 13:05:56 2018 -0700
    expand barChartSampleUrl and barChartMatrixUrl urls so they can be relative paths
• src/hg/makeDb/doc/ce11/crispr.txt
  • lines changed 3, context: html, text, full: html, text
    3c1d42b5846d46612b495f1aeece9a20857480ec Fri May 25 16:22:04 2018 -0700
    crispr track for ce11, refs #21517
• src/hg/makeDb/doc/equCab3/initialBuild.txt
  • lines changed 1030, context: html, text, full: html, text
    ef775d64683ce48acb82e88e96084588b034114b Wed May 23 14:35:50 2018 -0700
    new horse build underway refs #21223
  • lines changed 54, context: html, text, full: html, text
    1dac8115a7d4024eb494698fdd187b666909db29 Wed May 23 16:32:29 2018 -0700
    running repeat masker and simple repeats refs #21223
• src/hg/makeDb/doc/hg19Patch13.txt
  • lines changed 1066, context: html, text, full: html, text
    1c7465e1b79a3acf347c08466225cce3d3aa49a2 Fri May 25 15:28:06 2018 -0700
    beginning to build database refs #9869
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    a9a7259d8c8a56f6ae037118d210ab3d0c5a1bce Fri May 25 10:24:35 2018 -0700
    adding equCab3/horse refs #21223
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 22, context: html, text, full: html, text
    a9a7259d8c8a56f6ae037118d210ab3d0c5a1bce Fri May 25 10:24:35 2018 -0700
    adding equCab3/horse refs #21223
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    a9a7259d8c8a56f6ae037118d210ab3d0c5a1bce Fri May 25 10:24:35 2018 -0700
    adding equCab3/horse refs #21223
• src/hg/makeDb/genbank/etc/ignore.idx
  • lines changed 1, context: html, text, full: html, text
    495d2c4fc4f6e473ef87bf72f7b0358e9356932a Wed May 23 10:45:57 2018 -0700
    more things to ignore
• src/hg/makeDb/hgFakeAgp/hgFakeAgp.c
  • lines changed 19, context: html, text, full: html, text
    963e4dd376260ede884ad055ee580ab1585487be Wed May 23 11:34:36 2018 -0700
    add singleContigs option to better conserve names refs #21223
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    39d6f824e5f51c093d27c7781f840caab22b4d2e Wed May 23 11:40:01 2018 -0700
    add singleContigs option to better conserve names refs #21223
• src/hg/makeDb/schema/all.joiner
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    92183291b4e7f70f5423bfa6b179fa38fb0ed807 Fri May 25 10:50:50 2018 -0700
    adding equCab3 rules refs #21223
• src/hg/makeDb/trackDb/affyAllExonProbes.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/affyRatio.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/ccdsGene.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/crispr10K.html
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    2af117b841c2b3abe23c41031b91b2311a51de06 Mon May 21 11:25:39 2018 -0700
    fixup 200bp references to read correctly 10,000bp refs #19874
• src/hg/makeDb/trackDb/crispr10K.ra
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    2af117b841c2b3abe23c41031b91b2311a51de06 Mon May 21 11:25:39 2018 -0700
    fixup 200bp references to read correctly 10,000bp refs #19874
• src/hg/makeDb/trackDb/eponine.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/firstEF.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/fishClones.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/fosEndPairs.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/horse/equCab3/description.html
  • lines changed 64, context: html, text, full: html, text
    6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700
    initial files for equCab3 refs #21223
• src/hg/makeDb/trackDb/horse/equCab3/gap.html
  • lines changed 30, context: html, text, full: html, text
    6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700
    initial files for equCab3 refs #21223
• src/hg/makeDb/trackDb/horse/equCab3/gold.html
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    6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700
    initial files for equCab3 refs #21223
• src/hg/makeDb/trackDb/horse/equCab3/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700
    initial files for equCab3 refs #21223
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    c80fdcf3980d77b2a7a197fb75667e2834ed6b04 Wed May 23 14:27:30 2018 -0700
    adding gold/assembly search rule refs #21223
• src/hg/makeDb/trackDb/human/affyTxnPhase3FragsL.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/affyTxnPhase3FragsS.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/affyTxnPhase3L.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/affyTxnPhase3S.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/bacEndPairs.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/bamSLDenisova.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/cytoBand.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/decipher.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/denisovaModernHumans.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/ecoresTetNig1.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/eioJcviNAS.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Pval.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60PvalStrict.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SignalStrict.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Sites.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SitesStrict.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyChipSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyEcSignal.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyEcSites.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeAffyEcSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeBuFirstExon.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeEgaspFull.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeEgaspPartial.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeEgaspSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeEgaspUpdate.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeGencodeGeneMar07.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeGencodeGeneOct05.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeGencodeSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeIndels.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeLIChIP.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeLIChIPgIF.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodePseudogene.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeRikenCage.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeRna.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
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• src/hg/makeDb/trackDb/human/encodeStanfordChipSmoothed.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordChipSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordPromoters.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordRtPcr.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeUcsdChipSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeUncFaire.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeUtexChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeUtexChipSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeUvaDnaRepOrigins.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Pval.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sig.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sites.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeYaleMASPlacRNATransMap.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/est.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/evofold.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/fox2ClipSeqComp.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/gnfAtlas2.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hapmapLdPh.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hapmapSnps.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg17/encodeUtexStage.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/HInvGeneMrna.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/augustus.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/ceuBcellRNASeq.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/chainSelf.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/cnp.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/cnpRedon.html
  • lines changed 1, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/cons44way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSignal.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaTransfrags.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeBUORChID.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeMsaTbaDec07.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeNhgriDukeDnaseHs.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeRegulomeDnaseArray.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeSangerChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeSangerChipSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUCDavisChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUViennaRnaz.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUWRegulomeBase.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipHits.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipSuper.html
  • lines changed 4, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUcsdNgGif.html
  • lines changed 1, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChipBut.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChipSuper.html
  • lines changed 2, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUwDnaseSuper.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATars.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATransMap.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipRfbr.html
  • lines changed 1, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSites.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSuper.html
  • lines changed 6, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/evoCpg.html
  • lines changed 1, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/evofoldV2.html
  • lines changed 4, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/exaptedRepeats.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/exoniphy.html
  • lines changed 1, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/genotypeArrays.html
  • lines changed 2, context: html, text, full: html, text
    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/knownGene.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/mammalPsg.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/mostConserved28way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/multiz17way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/multiz28way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/nestedRepeats.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/nscan.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/nscanGene.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/omimAvSnp.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/pgSnp.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/phastConsElements17way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/phyloPCons28way.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/rdmr.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/rmsk.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/stsMap.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/tajD.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/tajdSnp.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/targetScanS.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/tfbsConsSites.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/uppsalaChipSignal.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/uppsalaChipSites.html
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• src/hg/makeDb/trackDb/human/hg18/uppsalaChipSuper.html
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• src/hg/makeDb/trackDb/human/hg18/uwNucOcc.html
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• src/hg/makeDb/trackDb/human/hg18/uwNucOccA375.html
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• src/hg/makeDb/trackDb/human/hg18/uwNucOccDennis.html
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• src/hg/makeDb/trackDb/human/hg18/uwNucOccMec.html
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• src/hg/makeDb/trackDb/human/hg18/vegaGeneComposite.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisChipPetAll.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaPet.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html
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• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethylSeq.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriNre.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRegTfbsClustered.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSunyalbanyRnaGeneChip.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Signal.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Sites.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Super.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Valid.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgRna.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.ra
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    d480a7a24a214d1a056ff6cff4bf15f02b1f63cd Fri May 25 16:25:57 2018 -0700
    Fixing broken links to mirbase for mm9 and hg38 and adding stanza for mirbase track update, refs #20853 and #21516
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    5400cc59b39174724fa1d2da9c27944c9cefb2dd Fri May 25 16:31:52 2018 -0700
    fixing typo in ulr label
• src/hg/makeDb/trackDb/human/hgdpFst.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hgdpGeo.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hgdpHzy.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hgdpIhs.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hgdpXpehh.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/ntModernHumans.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/phastBias.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/regPotential7X.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/rgdQtl.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/yaleBertoneTars.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/makefile
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    6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700
    initial files for equCab3 refs #21223
• src/hg/makeDb/trackDb/nestedRepeatsRM327.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/ntSeqContigs.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/ntSeqReads.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/rgdRatQtl.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/rmskRM327.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/rnaCluster.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/sacCer/sacCer2/gap.html
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    d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700
    Updating redirected links for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/sacCer/sacCer2/gold.html
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    d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700
    Updating redirected links for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html
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    d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700
    Updating redirected links for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/sacCer/sacCer2/sgdGene.html
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    d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700
    Updating redirected links for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/sacCer/sacCer2/sgdOther.html
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    d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700
    Updating redirected links for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/snp129.html
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    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/snp130.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/trackDb.ra
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    d480a7a24a214d1a056ff6cff4bf15f02b1f63cd Fri May 25 16:25:57 2018 -0700
    Fixing broken links to mirbase for mm9 and hg38 and adding stanza for mirbase track update, refs #20853 and #21516
• src/hg/makeDb/trackDb/xenoEst.html
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    68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700
    Updating broken and redirected links for hg18, uiLinks cronjob.
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToGenePred/tests/expected/bogusQuotesTest.out
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    38fbc2f4f4b338a74677d3d2d7f2950cd67ca5d5 Sat May 26 08:16:52 2018 -0700
    fixed tests cases due to changed messages
• src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.attrs
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.gp
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.out
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToGenePred/tests/input/makerBad.gff3
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToGenePred/tests/makefile
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/hg/utils/gff3ToPsl/gff3ToPsl.c
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    2b80406b27b687271ed362f391153bf8b950351e Sun May 27 10:04:16 2018 -0700
    forgot to add a file in previous commit
• src/inc/gff3.h
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/inc/srcVersion.h
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    34b031125c38ca2905e347369c3242d66699ea38 Tue May 29 10:07:19 2018 -0700
    New version number v366
• src/lib/gff3.c
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    9cf2a8c5cf241cfee686f3842e2faed9e4c07ef7 Fri May 25 13:40:48 2018 -0700
    changing gff3 reader to accept _ and - in tags, no redmine
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    5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700
    Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
• src/lib/tests/gff3Tester.c
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    a9b99423e42c32b2360a0fbe90cfe7330893bcf8 Sun May 27 12:14:37 2018 -0700
    need to update gff3test too
• src/utils/doLocusName
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    3c1d42b5846d46612b495f1aeece9a20857480ec Fri May 25 16:22:04 2018 -0700
    crispr track for ce11, refs #21517
• src/utils/makefile
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    3c1d42b5846d46612b495f1aeece9a20857480ec Fri May 25 16:22:04 2018 -0700
    crispr track for ce11, refs #21517
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    f9d6e3d57278c9bfcc68fea6e270fb318e383c48 Tue May 29 10:05:57 2018 -0700
    v366 final build

• lines changed: 3902
• files changed: 243