Commits for hiram

v366_preview2 to v366_base (2018-05-21 to 2018-05-29) v366

2af117b841c2b3abe23c41031b91b2311a51de06 Mon May 21 11:25:39 2018 -0700

• fixup 200bp references to read correctly 10,000bp refs #19874
  • src/hg/makeDb/trackDb/crispr10K.html - lines changed 197, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/crispr10K.ra - lines changed 3, context: html, text, full: html, text

963e4dd376260ede884ad055ee580ab1585487be Wed May 23 11:34:36 2018 -0700

• add singleContigs option to better conserve names refs #21223
  • src/hg/makeDb/hgFakeAgp/hgFakeAgp.c - lines changed 19, context: html, text, full: html, text

39d6f824e5f51c093d27c7781f840caab22b4d2e Wed May 23 11:40:01 2018 -0700

• add singleContigs option to better conserve names refs #21223
  • src/hg/makeDb/hgFakeAgp/hgFakeAgp.c - lines changed 3, context: html, text, full: html, text

6dccb6a882f7a98837ebf0745a30f30417ade171 Wed May 23 14:16:52 2018 -0700

• initial files for equCab3 refs #21223
  • src/hg/makeDb/trackDb/horse/equCab3/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab3/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab3/gold.html - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab3/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 2, context: html, text, full: html, text

c80fdcf3980d77b2a7a197fb75667e2834ed6b04 Wed May 23 14:27:30 2018 -0700

• adding gold/assembly search rule refs #21223
  • src/hg/makeDb/trackDb/horse/equCab3/trackDb.ra - lines changed 5, context: html, text, full: html, text

ef775d64683ce48acb82e88e96084588b034114b Wed May 23 14:35:50 2018 -0700

• new horse build underway refs #21223
  • src/hg/makeDb/doc/equCab3/initialBuild.txt - lines changed 1030, context: html, text, full: html, text

1dac8115a7d4024eb494698fdd187b666909db29 Wed May 23 16:32:29 2018 -0700

• running repeat masker and simple repeats refs #21223
  • src/hg/makeDb/doc/equCab3/initialBuild.txt - lines changed 54, context: html, text, full: html, text

a9a7259d8c8a56f6ae037118d210ab3d0c5a1bce Fri May 25 10:24:35 2018 -0700

• adding equCab3/horse refs #21223
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text

92183291b4e7f70f5423bfa6b179fa38fb0ed807 Fri May 25 10:50:50 2018 -0700

• adding equCab3 rules refs #21223
  • src/hg/makeDb/schema/all.joiner - lines changed 8, context: html, text, full: html, text

1c7465e1b79a3acf347c08466225cce3d3aa49a2 Fri May 25 15:28:06 2018 -0700

• beginning to build database refs #9869
  • src/hg/makeDb/doc/hg19Patch13.txt - lines changed 1066, context: html, text, full: html, text

f9d6e3d57278c9bfcc68fea6e270fb318e383c48 Tue May 29 10:05:57 2018 -0700

• v366 final build
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

34b031125c38ca2905e347369c3242d66699ea38 Tue May 29 10:07:19 2018 -0700

• New version number v366
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text