Commits for jnavarr5

v366_preview2 to v366_base (2018-05-21 to 2018-05-29) v366

68a8f799ed6471a3378128e4c4bdee8ee478dbac Tue May 22 15:22:01 2018 -0700

• Updating broken and redirected links for hg18, uiLinks cronjob.
  • src/hg/makeDb/trackDb/affyAllExonProbes.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/affyRatio.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ccdsGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/eponine.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/firstEF.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fishClones.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fosEndPairs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/affyTxnPhase3FragsL.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/affyTxnPhase3FragsS.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/affyTxnPhase3L.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/affyTxnPhase3S.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/bacEndPairs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/bamSLDenisova.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/cytoBand.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/decipher.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/denisovaModernHumans.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ecoresTetNig1.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/eioJcviNAS.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Pval.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60PvalStrict.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SignalStrict.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60Sites.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SitesStrict.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChipSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSignal.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSites.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeBuFirstExon.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspFull.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspPartial.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspSuper.html - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspUpdate.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeGencodeGeneMar07.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeGencodeGeneOct05.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeGencodeSuper.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeIndels.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeLIChIP.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeLIChIPgIF.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodePseudogene.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeRikenCage.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeRna.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordChip.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordChipSmoothed.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordChipSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordPromoters.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeStanfordRtPcr.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUcsdChipSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUncFaire.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUtexChip.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUtexChipSuper.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUvaDnaRepOrigins.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Pval.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sig.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sites.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleMASPlacRNATransMap.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleRnaSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/est.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/evofold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/fox2ClipSeqComp.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gnfAtlas2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hapmapLdPh.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hapmapSnps.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/encodeUtexStage.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/HInvGeneMrna.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/augustus.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/ceuBcellRNASeq.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/chainSelf.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cnp.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cnpRedon.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cons44way.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSignal.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaTransfrags.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeBUORChID.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeMsaTbaDec07.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeNhgriDukeDnaseHs.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeRegulomeDnaseArray.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeSangerChip.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeSangerChipSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUCDavisChip.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUViennaRnaz.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUWRegulomeBase.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipHits.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipSuper.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcsdNgGif.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChip.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChipBut.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUppsalaChipSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUwDnaseSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATars.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATransMap.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipRfbr.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSites.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSuper.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/evoCpg.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/evofoldV2.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/exaptedRepeats.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/exoniphy.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/genotypeArrays.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/knownGene.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/mammalPsg.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/mostConserved28way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/multiz17way.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/multiz28way.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/nestedRepeats.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/nscan.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/nscanGene.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/omimAvSnp.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnp.html - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/phastConsElements17way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/phyloPCons28way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/rdmr.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/rmsk.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/stsMap.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/tajD.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/tajdSnp.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/targetScanS.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/tfbsConsSites.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSignal.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSites.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uppsalaChipSuper.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOcc.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccA375.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccDennis.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccMec.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/vegaGeneComposite.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisChipPetAll.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.html - lines changed 2, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethylSeq.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriNre.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRegTfbsClustered.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeSunyalbanyRnaGeneChip.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Signal.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Sites.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Super.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUcsdNgTaf1Valid.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgRna.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgdpFst.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgdpGeo.html - lines changed 2, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/human/hgdpXpehh.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/ntModernHumans.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/phastBias.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/regPotential7X.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/rgdQtl.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/yaleBertoneTars.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/nestedRepeatsRM327.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ntSeqContigs.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ntSeqReads.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rgdRatQtl.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rmskRM327.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rnaCluster.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/snp129.html - lines changed 2, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/xenoEst.html - lines changed 1, context: html, text, full: html, text

d9a9c18f61b2073177971144ff824cfc8cf54cb1 Wed May 23 09:10:19 2018 -0700

• Updating redirected links for sacCer2, uiLinks cronjob.
  • src/hg/makeDb/trackDb/sacCer/sacCer2/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/gold.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/sgdGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/sgdOther.html - lines changed 2, context: html, text, full: html, text

ad3b8e350f69dc35d47ff9bd83d78faa2e5b5530 Wed May 23 11:11:20 2018 -0700

• Announcing the updated UCSC Genes v17 track for mm10, refs #19786
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 29, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text