Commits for markd

v366_preview2 to v366_base (2018-05-21 to 2018-05-29) v366

38fbc2f4f4b338a74677d3d2d7f2950cd67ca5d5 Sat May 26 08:16:52 2018 -0700

• fixed tests cases due to changed messages
  • src/hg/utils/gff3ToGenePred/tests/expected/bogusQuotesTest.out - lines changed 1, context: html, text, full: html, text

5652d415b7ad388d28eebebdca8e448da4a3e0f3 Sat May 26 22:54:39 2018 -0700

• Have gff3ToGenePred -warnAndContinue discard more bogus cases, such as Maker files that have exons and CDS that don't have gene or mRNA records. This way Max doesn't think I am a pathetic loser ;-)
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.attrs - lines changed 98, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.gp - lines changed 8, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.out - lines changed 50, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/input/makerBad.gff3 - lines changed 133, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/makefile - lines changed 9, context: html, text, full: html, text
  • src/inc/gff3.h - lines changed 8, context: html, text, full: html, text
  • src/lib/gff3.c - lines changed 60, context: html, text, full: html, text

2b80406b27b687271ed362f391153bf8b950351e Sun May 27 10:04:16 2018 -0700

• forgot to add a file in previous commit
  • src/hg/utils/gff3ToPsl/gff3ToPsl.c - lines changed 1, context: html, text, full: html, text

a9b99423e42c32b2360a0fbe90cfe7330893bcf8 Sun May 27 12:14:37 2018 -0700

• need to update gff3test too
  • src/lib/tests/gff3Tester.c - lines changed 1, context: html, text, full: html, text