Commits for chmalee

v367_preview2 to v367_base (2018-06-11 to 2018-06-18) v367

1ce3327d3b999a7df4d636b24b44a449899dfd69 Mon Jun 11 10:33:48 2018 -0700

• barChart hgc draws a barGraph instead of boxplot when only one sample per category, refs #21548
  • src/hg/hgc/hgcData/barChartBoxplot.R - lines changed 40, context: html, text, full: html, text

bf8d339decb066765332e22f07ad320eda6c9d4d Wed Jun 13 17:08:27 2018 -0700

• Fixup of expMatrixToBarchartBed so barCharts can have extraFields and so the script works as stated in the barChart documentation, needed for miRna expression track, refs #18508
  • src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed - lines changed 102, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/allOptions.output - lines changed 11, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/extraFields.coords - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/extraFields.output - lines changed 11, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/makefile - lines changed 6, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.as - lines changed 17, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.output - lines changed 1, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.output2 - lines changed 1, context: html, text, full: html, text

e77cadcbc61fd30f7498baf28439db07907184b4 Thu Jun 14 08:45:20 2018 -0700

• Adding test .as file to list of ignored files in buildTableDescriptions after email from Braney
  • src/test/buildTableDescriptions.pl - lines changed 1, context: html, text, full: html, text

7f2df21c4cd80508a8965db473f3d42d7ad0e8e1 Thu Jun 14 16:33:25 2018 -0700

• Fixing bar ordering bug for new bargraph hgc pages, refs #21548
  • src/hg/hgc/hgcData/barChartBoxplot.R - lines changed 1, context: html, text, full: html, text

f19221097f1eee55503c8d53a31423b2d3f1ecad Thu Jun 14 16:55:32 2018 -0700

• Changing miRna tissue atlas to a supertrack and changing the bar labels, refs #18508
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 17, context: html, text, full: html, text