File Changes for angie

v367_preview to v367_preview2 (2018-06-04 to 2018-06-11) v367

• src/hg/lib/lrg.c
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    e640dce06376856492a074bcc8676267e8943584 Mon Jun 4 15:18:44 2018 -0700
    lrgReconstructSequence also needed updates to handle partial LRG mappings. sorta refs #13359 #17877
• src/hg/makeDb/doc/hg19.txt
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    19c635937827c3d038ab2c04f118eab06fc0082f Wed Jun 6 10:20:50 2018 -0700
    Added note for next time about dbVar FTP reorganization.
• src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
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    eea7b200538f1a2f46c12a3a9540c8956168d604 Wed Jun 6 10:48:58 2018 -0700
    Adding idXref setting to script that generates GENCODE trackDb .ra and .html. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV13.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV15.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV16.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV18.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.ra
  • lines changed 1, context: html, text, full: html, text
    a7be63fbde10eba315bfb6867808feb3f6e150fa Wed Jun 6 10:21:46 2018 -0700
    Adding idXref setting to Gencode V19 genes so user can paste in ENSG* IDs. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV24lift37.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV9.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV19.ra
  • lines changed 1, context: html, text, full: html, text
    a7be63fbde10eba315bfb6867808feb3f6e150fa Wed Jun 6 10:21:46 2018 -0700
    Adding idXref setting to Gencode V19 genes so user can paste in ENSG* IDs. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV20.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV22.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV25.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV26.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV27.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV28.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM10.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM12.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM13.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM15.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM16.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM2.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM3.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM4.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM7.ra
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    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM8.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM9.ra
  • lines changed 1, context: html, text, full: html, text
    01e42748dd73957788aa4681ae422c85aa2f8574 Wed Jun 6 13:33:10 2018 -0700
    Adding idXref setting to the rest of the wgEncodeGencode Genes views. refs #21571