008c1354e9fce6bef2c4d494a1afc8f22b92c56a
kate
Fri Jun 8 11:43:29 2018 -0700
Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628
diff --git src/hg/hgc/gtexEqtlClusterClick.c src/hg/hgc/gtexEqtlClusterClick.c
index 219cee7..eab1b1c 100644
--- src/hg/hgc/gtexEqtlClusterClick.c
+++ src/hg/hgc/gtexEqtlClusterClick.c
@@ -1,26 +1,27 @@
/* Details page for GTEx eQTL Clusters */
/* Copyright (C) 2017 The Regents of the University of California
* See README in this or parent directory for licensing information. */
#include "common.h"
#include "hCommon.h"
#include "web.h"
#include "gtexTissue.h"
#include "gtexInfo.h"
#include "gtexEqtlCluster.h"
+#include "gtexUi.h"
#include "hgc.h"
static struct gtexEqtlCluster *getGtexEqtl(char *item, char *chrom, int start, int end, char *table)
/* Retrieve this item from the track table */
{
char *gene = firstWordInLine(cloneString(item));
struct sqlConnection *conn = hAllocConn(database);
struct gtexEqtlCluster *eqtls = NULL, *eqtl;
char **row;
int offset;
char where[512];
sqlSafefFrag(where, sizeof(where), "target='%s'", gene);
struct sqlResult *sr = hRangeQuery(conn, table, chrom, start, end, where, &offset);
while ((row = sqlNextRow(sr)) != NULL)
{
@@ -158,30 +159,33 @@
}
else
printf("%s\n", eqtl->name);
printf("
Distance from TSS: %d\n", eqtl->distance);
char posLink[1024];
safef(posLink, sizeof posLink,"%s:%d-%d",
hgTracksPathAndSettings(), database,
eqtl->chrom, eqtl->chromStart+1, eqtl->chromEnd,
eqtl->chrom, eqtl->chromStart+1, eqtl->chromEnd);
printf("
Position: %s\n", posLink);
printf("
Score: %d\n", eqtl->score);
printEqtlRegion(eqtl, tdb->table, conn);
printf("
Number of tissues with this eQTL: %d\n", eqtl->expCount);
+hFreeConn(&conn);
// print link to GTEx portal
printf("
"
"View eQTL Visualizer for this gene at the GTEx Portal\n",
geneName);
-hFreeConn(&conn);
+
+hPrintf(" ");
+gtexBodyMapLink();
printClusterDetails(eqtl, tdb->table);
webNewEmptySection();
printTrackHtml(tdb);
}