008c1354e9fce6bef2c4d494a1afc8f22b92c56a kate Fri Jun 8 11:43:29 2018 -0700 Add links to GTEx body map page: hgGene details, hgc for GTEx tracks, gene sorter column info. refs #18628 diff --git src/hg/hgc/gtexEqtlClusterClick.c src/hg/hgc/gtexEqtlClusterClick.c index 219cee7..eab1b1c 100644 --- src/hg/hgc/gtexEqtlClusterClick.c +++ src/hg/hgc/gtexEqtlClusterClick.c @@ -1,26 +1,27 @@ /* Details page for GTEx eQTL Clusters */ /* Copyright (C) 2017 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "hCommon.h" #include "web.h" #include "gtexTissue.h" #include "gtexInfo.h" #include "gtexEqtlCluster.h" +#include "gtexUi.h" #include "hgc.h" static struct gtexEqtlCluster *getGtexEqtl(char *item, char *chrom, int start, int end, char *table) /* Retrieve this item from the track table */ { char *gene = firstWordInLine(cloneString(item)); struct sqlConnection *conn = hAllocConn(database); struct gtexEqtlCluster *eqtls = NULL, *eqtl; char **row; int offset; char where[512]; sqlSafefFrag(where, sizeof(where), "target='%s'", gene); struct sqlResult *sr = hRangeQuery(conn, table, chrom, start, end, where, &offset); while ((row = sqlNextRow(sr)) != NULL) { @@ -158,30 +159,33 @@ } else printf("%s\n", eqtl->name); printf("<br><b>Distance from TSS:</b> %d\n", eqtl->distance); char posLink[1024]; safef(posLink, sizeof posLink,"<a href='%s&db=%s&position=%s%%3A%d-%d'>%s:%d-%d</a>", hgTracksPathAndSettings(), database, eqtl->chrom, eqtl->chromStart+1, eqtl->chromEnd, eqtl->chrom, eqtl->chromStart+1, eqtl->chromEnd); printf("<br><b>Position:</b> %s\n", posLink); printf("<br><b>Score:</b> %d\n", eqtl->score); printEqtlRegion(eqtl, tdb->table, conn); printf("<br><b>Number of tissues with this eQTL:</b> %d\n", eqtl->expCount); +hFreeConn(&conn); // print link to GTEx portal printf("<br><a target='_blank' href='https://www.gtexportal.org/home/bubbleHeatmapPage/%s'>" "View eQTL Visualizer for this gene at the GTEx Portal<a>\n", geneName); -hFreeConn(&conn); + +hPrintf(" "); +gtexBodyMapLink(); printClusterDetails(eqtl, tdb->table); webNewEmptySection(); printTrackHtml(tdb); }