All File Changes

v368_preview2 to v368_base (2018-07-02 to 2018-07-09) v368

• src/hg/cirm/cdw/cdwMakeFileTags/cdwMakeFileTags.c
  • lines changed 1, context: html, text, full: html, text
    6640be7cc9bd565d5b85e6857f7923b2820f3fbe Mon Jul 2 15:50:50 2018 -0700
    Adding organ_anatomical_name to facets.
• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 6, context: html, text, full: html, text
    07200d6bf02b4b868473619528321c570e969878 Mon Jul 2 16:01:15 2018 -0700
    cdwNavBar.h
  • lines changed 24, context: html, text, full: html, text
    54469e0d5392b825e1053632589d1990e7dca0cf Mon Jul 2 16:04:03 2018 -0700
    Ifdefing out support for browse tags.
  • lines changed 12, context: html, text, full: html, text
    4dad5c9092c4a15439ca488690201546c6059441 Wed Jul 4 04:49:50 2018 -0700
    CIRM: adding a note that user is on internal site like Hgwdevs, but in the CGI. note is stored in cirm-motd.html so changing it does not require a rebuild. refs #19886
• src/hg/cirm/cdw/cdwWebBrowse/cirm-motd.html
  • lines changed 5, context: html, text, full: html, text
    4dad5c9092c4a15439ca488690201546c6059441 Wed Jul 4 04:49:50 2018 -0700
    CIRM: adding a note that user is on internal site like Hgwdevs, but in the CGI. note is stored in cirm-motd.html so changing it does not require a rebuild. refs #19886
• src/hg/cirm/cdw/cdwWebBrowse/makefile
  • lines changed 1, context: html, text, full: html, text
    4dad5c9092c4a15439ca488690201546c6059441 Wed Jul 4 04:49:50 2018 -0700
    CIRM: adding a note that user is on internal site like Hgwdevs, but in the CGI. note is stored in cirm-motd.html so changing it does not require a rebuild. refs #19886
• src/hg/cirm/cdw/cdwWebBrowse/version.doc
  • lines changed 4, context: html, text, full: html, text
    07200d6bf02b4b868473619528321c570e969878 Mon Jul 2 16:01:15 2018 -0700
    cdwNavBar.h
  • lines changed 3, context: html, text, full: html, text
    27de86cae62711d1c50e943a71a01d7028094ad9 Mon Jul 2 16:04:23 2018 -0700
    Describing changes.
• src/hg/cirm/cdw/lib/cdwNavBar.h
  • lines changed 1, context: html, text, full: html, text
    07200d6bf02b4b868473619528321c570e969878 Mon Jul 2 16:01:15 2018 -0700
    cdwNavBar.h
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    9a8ea2436c7a0e498c0e903c6257e808a0ccd0ee Fri Jul 6 21:04:48 2018 -0700
    use long long to display total genome size over 4Gb refs #21715
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    a74fbb41fd6b0207a3950a8991725f315f86853e Mon Jul 2 15:10:16 2018 -0700
    Fixing compiler error message about unitialized variable.
• src/hg/hgc/barChartClick.c
  • lines changed 2, context: html, text, full: html, text
    cf439153331e3408020a5943d46b3eb6461ba073 Mon Jul 2 14:42:13 2018 -0700
    No need to check for adding too many fields since chopTabs does it automatically, change from code review refs #21687
• src/hg/htdocs/goldenPath/help/interact.html
  • lines changed 1, context: html, text, full: html, text
    eb0c46739c9f80479729d783884802a0ff3b34bc Fri Jul 6 14:29:05 2018 -0700
    Fixing link to example file, code review refs #21692
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 24, context: html, text, full: html, text
    03a899707a0cb268842ed6a34d1b3bc0b0eea56c Fri Jul 6 13:34:11 2018 -0700
    Announcing the GRCh37.p13 release, refs #9869
• src/hg/htdocs/images/Ambystoma_mexicanum.jpg
  • lines changed 0, context: html, text, full: html, text
    d7ce3c4645db595da07127654359467df0feb8d5 Fri Jul 6 13:07:55 2018 -0700
    Axolotl photograph from Ruben Undheim/Flickr/Wikimedia commons refs #21715
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    03a899707a0cb268842ed6a34d1b3bc0b0eea56c Fri Jul 6 13:34:11 2018 -0700
    Announcing the GRCh37.p13 release, refs #9869
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    1561d467333dbf45f1630539b0a090d8d6baabb8 Mon Jul 9 07:57:55 2018 -0700
    New version number v368
• src/hg/lib/hgFind.c
  • lines changed 1, context: html, text, full: html, text
    03c9391c8721e8a891e1a6cbdc43a2bb492daddd Tue Jul 3 15:52:37 2018 -0700
    change BIGNUM to INT_MAX because we need 2X!
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    ced87a4c57bb9427ea08b813056f8959272148a7 Tue Jul 3 13:43:19 2018 -0700
    Fix last updated time. refs #20546
• src/hg/makeDb/doc/ambMex1/initialBuild.txt
  • lines changed 849, context: html, text, full: html, text
    1d21e8b47993c291a2bf3ac26d0c13b992f26946 Fri Jul 6 13:02:43 2018 -0700
    initial sequence refs #21715
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 2, context: html, text, full: html, text
    bd9857726922002badad7890a51495184cbaed82 Tue Jul 3 08:40:16 2018 -0700
    add new patch 12 mappings to grcHhh38 genbank haplo maps
• src/hg/makeDb/schema/all.joiner
  • lines changed 9, context: html, text, full: html, text
    6a7209e41e628b5a24f234c44d396618352b3734 Tue Jul 3 18:38:24 2018 -0700
    adding hg19Patch13 definitions refs #9869
• src/hg/makeDb/trackDb/axolotl/ambMex1/description.html
  • lines changed 64, context: html, text, full: html, text
    3b951fb3d93c9d905dab70be5541f3ecb661510c Fri Jul 6 18:01:56 2018 -0700
    adding ambMex1 to the build refs #21715
• src/hg/makeDb/trackDb/axolotl/ambMex1/gap.html
  • lines changed 31, context: html, text, full: html, text
    3b951fb3d93c9d905dab70be5541f3ecb661510c Fri Jul 6 18:01:56 2018 -0700
    adding ambMex1 to the build refs #21715
• src/hg/makeDb/trackDb/axolotl/ambMex1/gold.html
  • lines changed 33, context: html, text, full: html, text
    3b951fb3d93c9d905dab70be5541f3ecb661510c Fri Jul 6 18:01:56 2018 -0700
    adding ambMex1 to the build refs #21715
• src/hg/makeDb/trackDb/axolotl/ambMex1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    3b951fb3d93c9d905dab70be5541f3ecb661510c Fri Jul 6 18:01:56 2018 -0700
    adding ambMex1 to the build refs #21715
• src/hg/makeDb/trackDb/galVar/galVar1/cons5way.html
  • lines changed 8, context: html, text, full: html, text
    f803b964fe56f387844b5bc8cb2e03eb5fd738d0 Thu Jun 28 07:37:37 2018 -0700
    Updating redirected links for galVar1, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/hg19Patch13.html
  • lines changed 27, context: html, text, full: html, text
    e08bbf1b95c12779b5ad6cbef24c54f8c6fd0179 Tue Jul 3 10:43:13 2018 -0700
    Adding bullet points for the number of patch scaffolds and replacing the bullet points in the 'Definitions' section with the definition list HTML tags, refs #9869
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    b270960498138c136914d356965161917d2c4e76 Mon Jul 2 16:12:03 2018 -0700
    Adding beta release tag for the push to hgwbeta, refs #9869
  • lines changed 0, context: html, text, full: html, text
    82e375161fbd781552a1b744100b63ac18fc9ad9 Tue Jul 3 07:31:49 2018 -0700
    Removing an extra space in the release tag stanza, refs #9869
  • lines changed 1, context: html, text, full: html, text
    a2cefaf664ee14e4d5d5b4433e775e36aea217ac Tue Jul 3 07:31:49 2018 -0700
    Removing a space in the release tag stanza and removing the old patch release on beta, refs #9869
  • lines changed 2, context: html, text, full: html, text
    fc8db81551ffd39b28db1e7b7fcec11400a305a7 Fri Jul 6 10:34:36 2018 -0700
    Removing release tags for the hg19Patch13 release and removing the old patch release from the RR. refs #9869
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    3b951fb3d93c9d905dab70be5541f3ecb661510c Fri Jul 6 18:01:56 2018 -0700
    adding ambMex1 to the build refs #21715
• src/hg/makeDb/trackDb/rat/rn3/knownGene.html
  • lines changed 2, context: html, text, full: html, text
    83ce3ad5bcfbf88788db7fdf5ffab26563a40c98 Fri Jul 6 08:30:07 2018 -0700
    Updating redirected links for rn3, uiLinks cronjob.
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 21, context: html, text, full: html, text
    1d0af61d50f5114de2636f61a18520c2aafdee6e Fri Jul 6 13:23:32 2018 -0700
    adding detection of large genome sequence to use option -long for faToTwoBit refs #21715
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    1561d467333dbf45f1630539b0a090d8d6baabb8 Mon Jul 9 07:57:55 2018 -0700
    New version number v368
• src/lib/tagToSql.c
  • lines changed 1, context: html, text, full: html, text
    41174b5d8ea7f6ec71b7c1d300f092b3212520db Mon Jul 2 16:05:49 2018 -0700
    Improving error message in a library function so that it works in more contexts.
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    a71ed9a5c691ba295b843b9acf3a10dfeeba0270 Mon Jul 9 07:56:39 2018 -0700
    v368 final build, refs #21667

• lines changed: 1168
• files changed: 38