Commits for chmalee

v367_base to v368_preview (2018-06-18 to 2018-06-25) v368

23ecc080ba35d0563c208e8ff96f9852475e34f6 Mon Jun 18 14:23:06 2018 -0700

• Adding url, urls, urlLabel and extraFields support to bigBarChart tracks
  • src/hg/hgc/barChartClick.c - lines changed 39, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 10, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html - lines changed 3, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 3, context: html, text, full: html, text

77b271a7f4756ce33099089d347ea5134739c70f Mon Jun 18 15:03:59 2018 -0700

• Moving barplot and boxplot drawing code into separate functions after code review, refs #21626
  • src/hg/hgc/hgcData/barChartBoxplot.R - lines changed 110, context: html, text, full: html, text

32216bfbd7b8ea04805cb96ec1ba4b3310b64aaf Tue Jun 19 07:17:25 2018 -0700

• Forget to initialize some variables that are used later, thanks Jonathan
  • src/hg/hgc/barChartClick.c - lines changed 2, context: html, text, full: html, text

4a03df77a2dac2278e4e8e80a05037edd8daaca9 Wed Jun 20 10:45:45 2018 -0700

• Adding a curl option to fetchChromSizes, and fixing 'type' message difference by using the '-p' option after user request, refs #21637
  • src/utils/userApps/fetchChromSizes - lines changed 27, context: html, text, full: html, text

ccbcc084780401ca9e070e3ce2e6da99a56db615 Wed Jun 20 12:03:19 2018 -0700

• changes to expMatrixToBarchartBed after code review, refs #21626
  • src/test/buildTableDescriptions.pl - lines changed 1, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed - lines changed 14, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/allOptions2.output - lines changed 11, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/makefile - lines changed 9, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/noExtraFields.coords - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test2.as - lines changed 15, context: html, text, full: html, text

693da22cbcf223255b22c8ac835bc9dbb51fa4c2 Thu Jun 21 10:08:09 2018 -0700

• fixing buildTableDescriptions duplicate warnings for expMatrixToBarchartBed tests, refs #21626
  • src/test/buildTableDescriptions.pl - lines changed 2, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.as - lines changed 1, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test2.as - lines changed 15, context: html, text, full: html, text

ab0857e8086bf3955be436c8b33df2467f5effec Thu Jun 21 14:02:34 2018 -0700

• miRna tissue atlas QA ready, refs #18508
  • src/hg/makeDb/doc/hg38/miRnaAtlas.txt - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/miRnaAtlas.html - lines changed 95, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 22, context: html, text, full: html, text

79f6490a63155bcb0eb9f0c3094b9fcba7f9d41f Thu Jun 21 14:26:25 2018 -0700

• Woops forgot to mention that miRna atlas coordinates come from mirbase v21 and forgot to link to mirbase, refs #18508
  • src/hg/makeDb/trackDb/human/hg38/miRnaAtlas.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 4, context: html, text, full: html, text