4d43519727301846829ed0fd8fc2f4060158ee70 jcasper Mon Jun 18 16:10:39 2018 -0700 Re-adding links out to gnomAD, refs #18951 diff --git src/hg/hgc/vcfClick.c src/hg/hgc/vcfClick.c index aaf91b3..f9e7eea 100644 --- src/hg/hgc/vcfClick.c +++ src/hg/hgc/vcfClick.c @@ -474,31 +474,31 @@ static void vcfRecordDetails(struct trackDb *tdb, struct vcfRecord *rec) /* Display the contents of a single line of VCF, assumed to be from seqName * (using seqName instead of rec->chrom because rec->chrom might lack "chr"). */ { if (isNotEmpty(rec->name) && differentString(rec->name, ".")) printf("<B>Name:</B> %s<BR>\n", rec->name); if (sameString(tdb->track, "exacVariants")) { printf("<b>ExAC:</b> " "<a href=\"http://exac.broadinstitute.org/variant/%s-%d-%s-%s\" " "target=_blank>%s:%d %s/%s</a><br>\n", skipChr(rec->chrom), rec->chromStart+1, rec->alleles[0], rec->alleles[1], skipChr(rec->chrom), rec->chromStart+1, rec->alleles[0], rec->alleles[1]); } -if (sameString(tdb->track, "gnomadVariants")) +if (sameString(tdb->track, "gnomadGenomesVariants") || sameString(tdb->track, "gnomadExomesVariants")) { printf("<b>gnomAD:</b> " "<a href=\"http://gnomad.broadinstitute.org/variant/%s-%d-%s-%s\" " "target=_blank>%s:%d %s/%s</a><br>\n", skipChr(rec->chrom), rec->chromStart+1, rec->alleles[0], rec->alleles[1], skipChr(rec->chrom), rec->chromStart+1, rec->alleles[0], rec->alleles[1]); } // Since these are variants, if it looks like a dbSNP or dbVar ID, provide a link: if (regexMatch(rec->name, "^rs[0-9]+$")) { printf("<B>dbSNP:</B> "); printDbSnpRsUrl(rec->name, "%s", rec->name); puts("<BR>"); } else if (regexMatch(rec->name, "^[en]ss?v[0-9]+$"))