Commits for angie

v368_preview to v368_preview2 (2018-06-25 to 2018-07-02) v368

8e2979254a2497116c9a4e58f9336918ffb2d491 Thu Jun 28 11:58:29 2018 -0700

• Added missing step to make sure p11 cumulative results are in place for adding p12 incremental results. refs #18853
  • src/hg/makeDb/doc/grcHhh38/patchUpdate.11.txt - lines changed 2, context: html, text, full: html, text

20e5049d9449bd5fab6d1b88492ed51220ae0aae Thu Jun 28 11:58:44 2018 -0700

• Removed unused chrom.sizes stuff and added error message to catch non-tab-separated input. refs #18853
  • src/hg/utils/automation/chromAlias.pl - lines changed 13, context: html, text, full: html, text

5e613cffce75e0d8d9869e096ea37d51e7e39c0e Thu Jun 28 11:59:09 2018 -0700

• Added -noChromFiles to suppress per-chrom files for builds with few sequences (like just the new sequences in GRCh38.p12). refs #18853
  • src/hg/utils/automation/makeDownloads.pl - lines changed 5, context: html, text, full: html, text

d0f2011f6faf5aab358ef6f1852898cd9c122b2d Thu Jun 28 16:18:19 2018 -0700

• Make names more specific with patch version. refs #18553
  • src/hg/makeDb/doc/grcHhh38/patchUpdate.11.txt - lines changed 13, context: html, text, full: html, text

1447370bc7356fcc7c9156c330c4a11e823d41c7 Fri Jun 29 15:56:23 2018 -0700

• Built a patches-only database for GRCh38.p12 (grcH38P12.txt) and added the sequences and basic annotations to grcHhh38 (patchUpdate.12.txt). refs #18853
  • src/hg/makeDb/doc/grcHhh38/grcH38P12.txt - lines changed 385, context: html, text, full: html, text
  • src/hg/makeDb/doc/grcHhh38/patchUpdate.12.txt - lines changed 591, context: html, text, full: html, text