Commits for jnavarr5

v368_base to v369_preview (2018-07-09 to 2018-07-16) v369

3b39629cbdd305534f553640ce6b711280477058 Mon Jul 9 10:38:41 2018 -0700

• Adding pennantIcon for the GRCh37.p13 release, refs #9869
  • src/hg/makeDb/trackDb/human/hg19/hg19Patch13.ra - lines changed 1, context: html, text, full: html, text

024af5fc96313d62eadb2758e7e1ee9bd2e35656 Mon Jul 9 10:49:06 2018 -0700

• Updating redirected links for hg19, uiLinks cronjob.
  • src/hg/makeDb/trackDb/human/cosmicRegions.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/allHg19RS_BW.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/chainSelf.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons100way.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/cons46way.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/evoCpg.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/evsEsp6500.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/exoniphy.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genomicSuperDups.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gwipsvizRiboseq.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pgSnp.html - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/pseudoYale60.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/targetScanS.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/tgpPhase1Accessibility.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/ucscRetroAli5.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/vegaGeneComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.release2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.html - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV24lift37.html - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClustered.release2.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunySwitchgear.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhRnaSeq.patch.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgRna.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hgIkmc.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lovd.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lrg.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/lrgTranscriptAli.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/placentalChainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/primateChainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/switchDbTss.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/vertebrateChainNet.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spAnnot.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spMut.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/spUniprot.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/uniprot.html - lines changed 1, context: html, text, full: html, text

ac59e261fc1f34972d61ee0bf2d786f5c8dc0455 Mon Jul 9 13:26:06 2018 -0700

• Adding a note that the 10K crispr tracks were built with financial support from Regeneron, refs #19874
  • src/hg/makeDb/trackDb/crispr10K.html - lines changed 3, context: html, text, full: html, text

059158b0f5ece7a6dd45c115fd8aa98fd23dca2d Mon Jul 9 13:45:51 2018 -0700

• Staging on hgwbeta and adding beta release tag, ref #19874
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

dbb0d64dff975019a02bcacad978659ded8b4d20 Mon Jul 9 15:42:50 2018 -0700

• Adding beta release tag for the DECIPHER SNV track now that the hgc fix is on the v368 final build, refs #21104
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

af560fad874cb1be6c26a057a3a6a3d4b0d320ba Mon Jul 9 16:13:25 2018 -0700

• Removing release tags to stage on the RR, refs #19874
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text

04fe0e276324a01597ad04572787323b6f46dab8 Wed Jul 11 15:39:24 2018 -0700

• Removing hide from 'superTrack on hide' as it was causing issues with hgMirror, no Redmine.
  • src/hg/makeDb/trackDb/human/hg38/hoffMap.ra - lines changed 1, context: html, text, full: html, text

a54c25609ad8acf353bc7fc68bd04c49757c9efd Thu Jul 12 13:37:37 2018 -0700

• Staging the DECIPHER SNVs track announcement until the v368 CGI release, refs #21104
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 21, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 7, context: html, text, full: html, text

56fee824c185a7ae383b6839d8ccc9e987acb9e8 Thu Jul 12 13:57:25 2018 -0700

• Adding common names to previous assembly announcements, no Redmine.
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 6, context: html, text, full: html, text