d7e32f57cdacaaffa1c5d807b779cc5e41313c77 angie Tue Jul 17 14:07:52 2018 -0700 Moving chainBridge into the userApps build, because it is used by doSameSpeciesLiftOver.pl. Thanks Jonathan. diff --git src/hg/mouseStuff/makefile src/hg/mouseStuff/makefile index a3765b6..3d6fb49 100644 --- src/hg/mouseStuff/makefile +++ src/hg/mouseStuff/makefile @@ -5,30 +5,31 @@ include ${kentSrc}/inc/localEnvironment.mk include ${kentSrc}/inc/common.mk BADDIRS = \ correctEst # List of directories to build for userApps UTILS_APPLIST = \ axtChain \ axtSort \ axtSwap \ axtToMaf \ axtToPsl \ bedCoverage \ chainAntiRepeat \ + chainBridge \ chainFilter \ chainMergeSort \ chainNet \ chainPreNet \ chainSort \ chainSplit \ chainStitchId \ chainSwap \ chainToAxt \ chainToPsl \ chainToPslBasic \ lavToAxt \ lavToPsl \ mafCoverage \ mafFetch \ @@ -49,31 +50,30 @@ axtAndBed \ axtBest \ axtCalcMatrix \ axtDropOverlap \ axtDropSelf \ axtFilter \ axtIndex \ axtPretty \ axtQueryCount \ axtRecipBest \ axtRescore \ axtSplitByTarget \ axtToBed \ axtToChain \ calcGap \ - chainBridge \ chainDbToFile \ gcForBed \ knownVsBlat \ libScan \ mousePoster \ netStats \ netToBedWithId \ orthologBySynteny \ phToPsl \ regionPicker \ rikenBestInCluster \ simpleChain \ splitSim \ subsetAxt \ subsetTraces \