b04a39a028980ea32b2ac62950bdff0a67de16d0 galt Wed Jul 18 14:48:19 2018 -0700 Add missing CSP header to pages not handled automatically by library functions. refs #21729. diff --git src/hg/hgCert/hgCert.c src/hg/hgCert/hgCert.c index a6e42aa..184d720 100644 --- src/hg/hgCert/hgCert.c +++ src/hg/hgCert/hgCert.c @@ -1,223 +1,224 @@ /* hgCert - hgCert parses cerfification data file and generates an html file and a .tab file */ /* Copyright (C) 2011 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "hCommon.h" +#include "htmshell.h" void usage() /* Explain usage and exit. */ { errAbort( "hgCert - hgCert parses cerfification data file and generates an html file and a .tab file\n" "usage: hgCert certificate.txt >certificate.html\n"); } char *doLine(char *lineType, char *lineIn) { char *result; char line[1000]; strcpy(line, lineIn); *(line+strlen(line) - 1) = '\0'; result = strstr(line, lineType); if (result == NULL) { return(result); } else { result = result + strlen(lineType); return(result); } } char *doLine2(char *lineIn, char *lineType) { char *chp; char line[1000]; strcpy(line, lineIn); *(line+strlen(line) - 1) = '\0'; chp = strstr(line, ":"); if (chp == NULL) return(strdup("???")); *chp = '\0'; chp ++; chp ++; chp = strdup(chp); strcpy(lineType, line); if (strcmp(chp, " ") == 0) chp = strdup(" "); return(chp); } int main(int argc, char *argv[]) { char *infileName; FILE *inf, *outf; char line[1000]; char *content; char *contact=""; char *join; char *join1, *join2; char *spanner, *variation, *variationEvidence, *comment, *evaluation, *remark; char lineType[100]; //int i,j; if (argc != 2) { usage(); } else { infileName = argv[1]; - fprintf(stdout, "<HTML><HEAD><TITLE>Non-standard Join Certificates</TITLE>\n"); + fprintf(stdout, "<HTML><HEAD>\n%s<TITLE>Non-standard Join Certificates</TITLE>\n", getCspMetaHeader()); fprintf(stdout, "<META http-equiv=Content-Type content=\"text/html; charset=iso-8859-1\">\n"); fprintf(stdout, "<META content=\"MSHTML 6.00.2800.1106\" name=GENERATOR></HEAD>\n"); fprintf(stdout, "<BODY><span style='font-family:Arial;'>\n"); fprintf(stdout, "<TABLE cellspacing=3 cols=9 border cellPadding=2\n"); fprintf(stdout, " <TR BGCOLOR='#FFFEE8'><TH>Accession 1</TH>\n"); fprintf(stdout, " <TH>Accession 2</TH>\n"); fprintf(stdout, " <TH>Spanner</TH>\n"); fprintf(stdout, " <TH>Variation</TH>\n"); fprintf(stdout, " <TH>Variation Evidence</TH>\n"); fprintf(stdout, " <TH>Comment</TH>\n"); fprintf(stdout, " <TH>Evaluation</TH>\n"); fprintf(stdout, " <TH>Remark</TH>\n"); fprintf(stdout, " <TH>Contact</TH>\n"); fprintf(stdout, " </TR>\n"); outf = fopen("cert.tab", "w"); if ((inf = fopen(infileName, "r")) == NULL) { fprintf(stderr, "Can't open file %s.\n", infileName); exit(8); } while (fgets(line, 1000, inf) != NULL) { content = doLine("CONTACT: ", line); if (content != NULL) { contact = strdup(content); fgets(line, 1000, inf); fgets(line, 1000, inf); } join = doLine("JOIN: ", line); if (join != NULL) { join1 = join; join2 = strstr(join, " "); *join2 = '\0'; join2++; join1 = strdup(join1); join2 = strdup(join2); fgets(line, 1000, inf); } else { fprintf(stderr, "No JOIN!\n"); exit(1); } spanner=variation=variationEvidence=comment=evaluation = remark= strdup("  "); again: content = doLine2(line, lineType); if (strcmp(lineType, "VARIATION") == 0) { variation = content; } content = doLine2(line, lineType); if (strcmp(lineType, "SPANNER") == 0) { spanner = content; } content = doLine2(line, lineType); if (strcmp(lineType, "VARIATION EVIDENCE") == 0) { variationEvidence = content; } content = doLine2(line, lineType); if (strcmp(lineType, "REMARK") == 0) { remark = content; } content = doLine2(line, lineType); if (strcmp(lineType, "COMMENT") == 0) { comment = content; } content = doLine2(line, lineType); if (strcmp(lineType, "EVALUATION") == 0) { evaluation = content; } fgets(line, 1000, inf); if (strlen(line) > 3) { goto again; } else { printf("<TR>"); printf("<TD>%s</TD>", join1); printf("<TD>%s</TD>", join2); printf("<TD>%s</TD>", spanner); printf("<TD>%s</TD>", variation); printf("<TD>%s</TD>", variationEvidence); printf("<TD>%s</TD>", comment); printf("<TD>%s</TD>", evaluation); printf("<TD>%s</TD>", remark); printf("<TD><A HREF=\"mailto:%s\">%s</A></TD>", contact, contact); printf("</TR>\n"); fprintf(outf, "%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n", join1, join2, spanner, evaluation, variation, variationEvidence, contact, remark, comment); } } } /*else { fprintf(stderr, "Usage: hgCert certificate.txt >certificate.html\n\n"); return(1); } */ fprintf(stdout, "</table</span>\n"); fprintf(stdout, "</body></html>\n"); fclose(outf); return(0); }