110f5e12a634db49ea9aa1ea23ff4965f1c2befe
galt
  Tue Aug 14 13:48:57 2018 -0700
changing cse to soe in domains, sometimes gi. ref #21876

diff --git src/hg/bedItemOverlapCount/bedItemOverlapCount.c src/hg/bedItemOverlapCount/bedItemOverlapCount.c
index ad27a88..22d0aba 100644
--- src/hg/bedItemOverlapCount/bedItemOverlapCount.c
+++ src/hg/bedItemOverlapCount/bedItemOverlapCount.c
@@ -52,31 +52,31 @@
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "bedItemOverlapCount - count number of times a base is overlapped by the\n"
   "\titems in a bed file.  Output is bedGraph 4 to stdout.\n"
   "usage:\n"
   " sort bedFile.bed | bedItemOverlapCount [options] <database> stdin\n"
   "To create a bigWig file from this data to use in a custom track:\n"
   " sort -k1,1 bedFile.bed | bedItemOverlapCount [options] <database> stdin \\\n"
   "         > bedFile.bedGraph\n"
   " bedGraphToBigWig bedFile.bedGraph chrom.sizes bedFile.bw\n"
   "   where the chrom.sizes is obtained with the script: fetchChromSizes\n"
   "   See also:\n"
-  " http://genome-test.cse.ucsc.edu/~kent/src/unzipped/utils/userApps/fetchChromSizes\n"
+  " http://genome-test.gi.ucsc.edu/~kent/src/unzipped/utils/userApps/fetchChromSizes\n"
   "options:\n"
   "   -zero      add blocks with zero count, normally these are ommitted\n"
   "   -bed12     expect bed12 and count based on blocks\n"
   "              Without this option, only the first three fields are used.\n"
   "   -max       if counts per base overflows set to max (%lu) instead of exiting\n"
   "   -outBounds output min/max to stderr\n"
   "   -chromSize=sizefile\tRead chrom sizes from file instead of database\n"
   "             sizefile contains two white space separated fields per line:\n"
   "		chrom name and size\n"
   "   -host=hostname\tmysql host used to get chrom sizes\n"
   "   -user=username\tmysql user\n"
   "   -password=password\tmysql password\n\n"
   "Notes:\n"
   " * You may want to separate your + and - strand\n"
   "   items before sending into this program as it only looks at\n"