110f5e12a634db49ea9aa1ea23ff4965f1c2befe
galt
Tue Aug 14 13:48:57 2018 -0700
changing cse to soe in domains, sometimes gi. ref #21876
diff --git src/hg/hgLiftOver/hgLiftOver.c src/hg/hgLiftOver/hgLiftOver.c
index 1334c10..5252283 100644
--- src/hg/hgLiftOver/hgLiftOver.c
+++ src/hg/hgLiftOver/hgLiftOver.c
@@ -301,31 +301,31 @@
cgiSimpleTableFieldStart();
printf("%s", fudgeThick ? "on" : "off");
cgiTableFieldEnd();
cgiTableRowEnd();
cgiTableEnd();
}
void webDownloads()
{
webNewSection("Command Line Tool");
cgiParagraph(
"To lift genome annotations locally on Linux systems, download the "
""
"liftOver executable and the appropriate "
-""
+""
"chain file."
" Run liftOver with no arguments to see the usage message.\n");
}
double scoreLiftOverChain(struct liftOverChain *chain,
char *fromOrg, char *fromDb, char *toOrg, char *toDb,
char *cartOrg, char *cartDb, struct hash *dbRank,
struct hash *dbHash)
/* Score the chain in terms of best match for cart settings */
{
double score = 0;
struct dbDb *chainFromDbDb = hashFindVal(dbHash, chain->fromDb);
struct dbDb *chainToDbDb = hashFindVal(dbHash, chain->toDb);