src/hg/hgc/lowelab.c 110f5e12a634db49ea9aa1ea23ff4965f1c2befe

110f5e12a634db49ea9aa1ea23ff4965f1c2befe
galt
  Tue Aug 14 13:48:57 2018 -0700
changing cse to soe in domains, sometimes gi. ref #21876

diff --git src/hg/hgc/lowelab.c src/hg/hgc/lowelab.c
index 90f6443..ee1d9ad 100644
--- src/hg/hgc/lowelab.c
+++ src/hg/hgc/lowelab.c
@@ -3245,35 +3245,35 @@
 
     hFreeConn(&conn);
     printTrackHtml(tdb);
 }
 
 void doWiki(char *track, struct trackDb *tdb, char *itemName)
 {
   char strand[2];
 
   printf("<HEAD>%s", getCspMetaHeader());
 
   if(startsWith("Make", itemName))
   {
     strand[0] = itemName[strlen(itemName)-1];
     strand[1] = 0;
-    printf("<META HTTP-EQUIV=\"REFRESH\" content=\"0; URL=http://lowelabwiki.cse.ucsc.edu/index.php/BED:%s:%s:%d-%d:%s\"</META>", database, seqName, winStart, winEnd, strand);
+    printf("<META HTTP-EQUIV=\"REFRESH\" content=\"0; URL=http://lowelabwiki.soe.ucsc.edu/index.php/BED:%s:%s:%d-%d:%s\"</META>", database, seqName, winStart, winEnd, strand);
   }
   else
   {
-    printf("<META HTTP-EQUIV=\"REFRESH\" content=\"0; URL=http://lowelabwiki.cse.ucsc.edu/index.php/BED:%s:%s:%s\"</META>", database, seqName, itemName);
+    printf("<META HTTP-EQUIV=\"REFRESH\" content=\"0; URL=http://lowelabwiki.soe.ucsc.edu/index.php/BED:%s:%s:%s\"</META>", database, seqName, itemName);
   }
 
   printf("</HEAD>");
 }
 
 void doRNAHybridization(struct trackDb *tdb, char *itemName)
 {
   struct sqlConnection *conn = hAllocConn(database);
   char query[512];
   struct sqlResult *sr;
   char **row;
   struct rnaHybridization *rnaHyb;
   char rnaHybridizationTable[] = "rnaHybridization";
   char tRNATable[] = "tRNAs";
   char jgiTable[] = "jgiGene";
@@ -3439,30 +3439,31 @@
         bedSize = atoi(words[1]);
     if (bedSize < 3) bedSize = 3;
 
   genericHeader(tdb,itemName);
   dupe = cloneString(tdb->type);
   wordCount = chopLine(dupe, words);
 
   rowOffset = hOffsetPastBin(database,seqName, tdb->table);
 
   sqlSafef(query, sizeof query, "select * from %s where name = '%s' and chrom = '%s' and chromStart = %d and chromEnd = '%d';", tdb->table, itemName,seqName,start, end);
   sr = sqlGetResult(conn, query);
   while ((row = sqlNextRow(sr)) != NULL)
     {
         infoload = bedLoadN(row+rowOffset, bedSize);
     printf("<B>Name:</B> %s\n", infoload->name);
+    // archdev-holmes no longer exists, but what should this be?
     printf(" <A HREF=\"http://archdev-holmes.cse.ucsc.edu/cgi-bin/hgFrame?track=loweOrthologs&refseq=1&db=%s&name=%s\">List of Orthologs</A><BR>",database,infoload->name);
     printf("<B>Position:</B> "
                  "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">",
                  hgTracksPathAndSettings(), database, infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
           printf("%s:%d-%d</A><BR>\n", infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
       printf("<B>Strand:</B> %s<BR>\n", infoload->strand);
       printf("<B>Genomic size: </B> %d nt<BR>\n", (infoload->chromEnd - infoload->chromStart));
 
           if (infoload->next != NULL)
             printf("<hr>\n");
     }
   sqlFreeResult(&sr);
   hFreeConn(&conn);
   printTrackHtml(tdb);
 }