3f2e6792566fd91a20c9c892e3c29ca487c1616c
galt
  Tue Aug 14 13:56:52 2018 -0700
last minute lowelab fix. cse domain is going away.

diff --git src/hg/hgc/lowelab.c src/hg/hgc/lowelab.c
index ee1d9ad..1707f4e 100644
--- src/hg/hgc/lowelab.c
+++ src/hg/hgc/lowelab.c
@@ -3440,31 +3440,31 @@
     if (bedSize < 3) bedSize = 3;
 
   genericHeader(tdb,itemName);
   dupe = cloneString(tdb->type);
   wordCount = chopLine(dupe, words);
 
   rowOffset = hOffsetPastBin(database,seqName, tdb->table);
 
   sqlSafef(query, sizeof query, "select * from %s where name = '%s' and chrom = '%s' and chromStart = %d and chromEnd = '%d';", tdb->table, itemName,seqName,start, end);
   sr = sqlGetResult(conn, query);
   while ((row = sqlNextRow(sr)) != NULL)
     {
         infoload = bedLoadN(row+rowOffset, bedSize);
     printf("<B>Name:</B> %s\n", infoload->name);
     // archdev-holmes no longer exists, but what should this be?
-    printf(" <A HREF=\"http://archdev-holmes.cse.ucsc.edu/cgi-bin/hgFrame?track=loweOrthologs&refseq=1&db=%s&name=%s\">List of Orthologs</A><BR>",database,infoload->name);
+    printf(" <A HREF=\"http://archdev-holmes.soe.ucsc.edu/cgi-bin/hgFrame?track=loweOrthologs&refseq=1&db=%s&name=%s\">List of Orthologs</A><BR>",database,infoload->name);
     printf("<B>Position:</B> "
                  "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">",
                  hgTracksPathAndSettings(), database, infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
           printf("%s:%d-%d</A><BR>\n", infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
       printf("<B>Strand:</B> %s<BR>\n", infoload->strand);
       printf("<B>Genomic size: </B> %d nt<BR>\n", (infoload->chromEnd - infoload->chromStart));
 
           if (infoload->next != NULL)
             printf("<hr>\n");
     }
   sqlFreeResult(&sr);
   hFreeConn(&conn);
   printTrackHtml(tdb);
 }
 
@@ -3552,36 +3552,36 @@
 
   rowOffset = hOffsetPastBin(database,seqName, tdb->table);
 
   sqlSafef(query, sizeof query, "select * from %s where name = '%s' and chrom = '%s' and chromStart = %d and chromEnd = '%d';", tdb->table, itemName,seqName,start, end);
   sr = sqlGetResult(conn, query);
   while ((row = sqlNextRow(sr)) != NULL)
     {
         infoload = megablastInfoLoad(row+rowOffset);
     printf("<B>Name:</B> %s<BR>\n", infoload->name);
     printf("<B>Accession:</B>  %s<A HREF=\"http://www.ncbi.nlm.nih.gov/nuccore/%s\" TARGET=_blank>",
            infoload->name, infoload->name);
     printf(" Link to NCBI Site</A> <BR>\n");
     printf("<B>Description:</B> %s<BR>\n", infoload->fullname);
     printf("<B>E-value:</B> %0.0e", infoload->evalue);
     #ifdef LISTUI
-    printf(" <A HREF=\"http://archdev-holmes.cse.ucsc.edu/cgi-bin/hgList?track=megablastInfo&order=evalue&db=%s\">Sort by E-value</A>",database);
+    printf(" <A HREF=\"http://archdev-holmes.soe.ucsc.edu/cgi-bin/hgList?track=megablastInfo&order=evalue&db=%s\">Sort by E-value</A>",database);
     #endif
     printf("<BR>\n");
     printf("<B>Protein Identity:</B> %u%%\n", infoload->percentident);
     #ifdef LISTUI
-    printf(" <A HREF=\"http://archdev-holmes.cse.ucsc.edu/cgi-bin/hgList?track=megablastInfo&order=percentident&db=%s\">Sort by Percent Identity</A>",database);
+    printf(" <A HREF=\"http://archdev-holmes.soe.ucsc.edu/cgi-bin/hgList?track=megablastInfo&order=percentident&db=%s\">Sort by Percent Identity</A>",database);
     #endif
     printf("<BR>\n");
           printf("<B>Position:</B> "
                  "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">",
                  hgTracksPathAndSettings(), database, infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
           printf("%s:%d-%d</A><BR>\n", infoload->chrom, infoload->chromStart + 1, infoload->chromEnd);
           printf("<B>Strand:</B> %s<BR>\n", infoload->strand);
           printf("<B>Genomic size: </B> %d nt<BR>\n", (infoload->chromEnd - infoload->chromStart));
           if (infoload->next != NULL)
             printf("<hr>\n");
     }
   sqlFreeResult(&sr);
   hFreeConn(&conn);
   megablastInfoFree(&infoload);
   printTrackHtml(tdb);