110f5e12a634db49ea9aa1ea23ff4965f1c2befe galt Tue Aug 14 13:48:57 2018 -0700 changing cse to soe in domains, sometimes gi. ref #21876 diff --git src/jkOwnLib/gfInternal.c src/jkOwnLib/gfInternal.c index f8fbd68..eac2700 100644 --- src/jkOwnLib/gfInternal.c +++ src/jkOwnLib/gfInternal.c @@ -76,31 +76,31 @@ reverseIntRange(&range->tStart, &range->tEnd, nib->size); gfiExpandRange(range, querySize, nib->size, respectFrame, isRc, expansion); target = nibLdPart(fileName, nib->f, nib->size, range->tStart, range->tEnd - range->tStart); if (isRc) { reverseComplement(target->dna, target->size); reverseIntRange(&range->tStart, &range->tEnd, nib->size); } *retTotalSeqSize = nib->size; } else { struct twoBitFile *tbf = NULL; // split a filename+chrom like "/gbdb/hg19/hg19.2bit:chr1" - // (can also be URL like "http://hgdownload.cse.ucsc.edu/gbdb/hg19/hg19.2bit:chr1") + // (can also be URL like "http://hgdownload.soe.ucsc.edu/gbdb/hg19/hg19.2bit:chr1") // into filename and tSeqName char *tSeqName = strrchr(fileName, ':'); int tSeqSize = 0; if (tSeqName == NULL) errAbort("No colon in .2bit response from gfServer"); *tSeqName++ = 0; tbf = hashFindVal(tFileCache, fileName); if (tbf == NULL) { tbf = twoBitOpen(fileName); hashAdd(tFileCache, fileName, tbf); } tSeqSize = twoBitSeqSize(tbf, tSeqName); if (isRc) reverseIntRange(&range->tStart, &range->tEnd, tSeqSize);