110f5e12a634db49ea9aa1ea23ff4965f1c2befe galt Tue Aug 14 13:48:57 2018 -0700 changing cse to soe in domains, sometimes gi. ref #21876 diff --git src/utils/bedClip/bedClip.c src/utils/bedClip/bedClip.c index 9b72f4b..c308bbe 100644 --- src/utils/bedClip/bedClip.c +++ src/utils/bedClip/bedClip.c @@ -7,31 +7,31 @@ #include "hash.h" #include "options.h" #include "bbiFile.h" #include "sqlNum.h" #include "obscure.h" void usage() /* Explain usage and exit. */ { errAbort( "bedClip - Remove lines from bed file that refer to off-chromosome locations.\n" "usage:\n" " bedClip [options] input.bed chrom.sizes output.bed\n" "chrom.sizes is a two-column file/URL: <chromosome name> <size in bases>\n" "If the assembly <db> is hosted by UCSC, chrom.sizes can be a URL like\n" - " http://hgdownload.cse.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" + " http://hgdownload.soe.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" "or you may use the script fetchChromSizes to download the chrom.sizes file.\n" "If not hosted by UCSC, a chrom.sizes file can be generated by running\n" "twoBitInfo on the assembly .2bit file.\n" "options:\n" " -truncate - truncate items that span ends of chrom instead of the\n" " default of dropping the items\n" " -verbose=2 - set to get list of lines clipped and why" ); } static struct optionSpec options[] = { {"truncate", OPTION_BOOLEAN}, {NULL, 0}, };