110f5e12a634db49ea9aa1ea23ff4965f1c2befe galt Tue Aug 14 13:48:57 2018 -0700 changing cse to soe in domains, sometimes gi. ref #21876 diff --git src/utils/bedGraphToBigWig/bedGraphToBigWig.c src/utils/bedGraphToBigWig/bedGraphToBigWig.c index 097476b..5a1e806 100644 --- src/utils/bedGraphToBigWig/bedGraphToBigWig.c +++ src/utils/bedGraphToBigWig/bedGraphToBigWig.c @@ -27,31 +27,31 @@ // Undocumented on purpose. void usage() /* Explain usage and exit. */ { errAbort( "bedGraphToBigWig v %d - Convert a bedGraph file to bigWig format.\n" "usage:\n" " bedGraphToBigWig in.bedGraph chrom.sizes out.bw\n" "where in.bedGraph is a four column file in the format:\n" " <chrom> <start> <end> <value>\n" "and chrom.sizes is a two-column file/URL: <chromosome name> <size in bases>\n" "and out.bw is the output indexed big wig file.\n" "If the assembly <db> is hosted by UCSC, chrom.sizes can be a URL like\n" - " http://hgdownload.cse.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" + " http://hgdownload.soe.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" "or you may use the script fetchChromSizes to download the chrom.sizes file.\n" "If not hosted by UCSC, a chrom.sizes file can be generated by running\n" "twoBitInfo on the assembly .2bit file.\n" "The input bedGraph file must be sorted, use the unix sort command:\n" " sort -k1,1 -k2,2n unsorted.bedGraph > sorted.bedGraph\n" "options:\n" " -blockSize=N - Number of items to bundle in r-tree. Default %d\n" " -itemsPerSlot=N - Number of data points bundled at lowest level. Default %d\n" " -unc - If set, do not use compression." , bbiCurrentVersion, blockSize, itemsPerSlot ); } static struct optionSpec options[] = { {"blockSize", OPTION_INT},