110f5e12a634db49ea9aa1ea23ff4965f1c2befe galt Tue Aug 14 13:48:57 2018 -0700 changing cse to soe in domains, sometimes gi. ref #21876 diff --git src/utils/wigToBigWig/wigToBigWig.c src/utils/wigToBigWig/wigToBigWig.c index 6f3b6d1..177a480 100644 --- src/utils/wigToBigWig/wigToBigWig.c +++ src/utils/wigToBigWig/wigToBigWig.c @@ -20,31 +20,31 @@ static boolean fixedSummaries = FALSE; static boolean keepAllChromosomes = FALSE; void usage() /* Explain usage and exit. */ { errAbort( "wigToBigWig v %d - Convert ascii format wig file (in fixedStep, variableStep\n" "or bedGraph format) to binary big wig format.\n" "usage:\n" " wigToBigWig in.wig chrom.sizes out.bw\n" "Where in.wig is in one of the ascii wiggle formats, but not including track lines\n" "and chrom.sizes is a two-column file/URL: <chromosome name> <size in bases>\n" "and out.bw is the output indexed big wig file.\n" "If the assembly <db> is hosted by UCSC, chrom.sizes can be a URL like\n" - " http://hgdownload.cse.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" + " http://hgdownload.soe.ucsc.edu/goldenPath/<db>/bigZips/<db>.chrom.sizes\n" "or you may use the script fetchChromSizes to download the chrom.sizes file.\n" "If not hosted by UCSC, a chrom.sizes file can be generated by running\n" "twoBitInfo on the assembly .2bit file.\n" "options:\n" " -blockSize=N - Number of items to bundle in r-tree. Default %d\n" " -itemsPerSlot=N - Number of data points bundled at lowest level. Default %d\n" " -clip - If set just issue warning messages rather than dying if wig\n" " file contains items off end of chromosome.\n" " -unc - If set, do not use compression.\n" " -fixedSummaries - If set, use a predefined sequence of summary levels.\n" " -keepAllChromosomes - If set, store all chromosomes in b-tree." , bbiCurrentVersion, blockSize, itemsPerSlot ); }