Commits for chmalee

v370_preview to v370_preview2 (2018-08-06 to 2018-08-13) v370

9ed6f979a8ec95ac934e5e8fef028d188b76a035 Mon Aug 6 14:38:57 2018 -0700

• pslMismatchGapToBed now outputs a single bed9+ instead of 5 different bed files, refs #21079
  • src/hg/inc/txAliDiff.h - lines changed 82, context: html, text, full: html, text
  • src/hg/lib/txAliDiff.as - lines changed 24, context: html, text, full: html, text
  • src/hg/lib/txAliDiff.c - lines changed 233, context: html, text, full: html, text
  • src/hg/lib/txAliDiff.sql - lines changed 30, context: html, text, full: html, text
  • src/hg/utils/pslMismatchGapToBed/pslMismatchGapToBed.c - lines changed 206, context: html, text, full: html, text

2f0fcb2ddab64ea1f6386d68cfd7879267b7b99b Mon Aug 6 14:49:22 2018 -0700

• Woops forgot the makefile, refs #21079
  • src/hg/lib/makefile - lines changed 1, context: html, text, full: html, text

ec633e36713743a8e810675f7f359e74d6625939 Mon Aug 6 15:46:50 2018 -0700

• fetchChromSizes: just try the curl, wget, etc commands instead of checking they exist first. We already were checking for the return code anyways, refs #21854
  • src/utils/userApps/fetchChromSizes - lines changed 25, context: html, text, full: html, text

76bf2309472399482b007ffbf94d5de4c7eeb303 Tue Aug 7 10:34:35 2018 -0700

• RefSeq Genomic Diffs track QA ready, refs #21079
  • src/hg/makeDb/doc/hg38/ncbiRefSeqGenomicDiff.txt - lines changed 99, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 12, context: html, text, full: html, text

a2cd1aac8311b307dbed8be7bc32f7546da7bda0 Wed Aug 8 08:16:39 2018 -0700

• fixing ncbi refseq make beta build error, no refs
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 2, context: html, text, full: html, text