5adcf6bc2904690de7b7b30a83ec8a7a0996abe9
galt
  Tue Aug 21 00:01:25 2018 -0700
changing cse subdomain to soe

diff --git src/utils/qa/checkCoverage.csh src/utils/qa/checkCoverage.csh
index aa68625..0c7ae15 100755
--- src/utils/qa/checkCoverage.csh
+++ src/utils/qa/checkCoverage.csh
@@ -123,31 +123,31 @@
   # report
   echo
   echo "largest missing non-gap regions are here:"
   
   echo
   echo "chrom chromStart chromEnd size" \
     | awk '{ printf("%13s %14s %14s %12s \n", $1, $2, $3, $4) }'
   echo "----- ---------- -------- ----" \
     | awk '{ printf("%13s %14s %14s %12s \n", $1, $2, $3, $4) }'
   head -10 $table.holes.sort \
     | awk '{ printf("%13s %14s %14s %12s \n", $1, $2, $3, $4) }'
   echo
   
   echo
   # make links for three biggest
-  set url1="http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=$db&position="
+  set url1="http://genome-test.soe.ucsc.edu/cgi-bin/hgTracks?db=$db&position="
   set url2="&$table=pack&gap=dense"
   set bigThree=`head -3 $table.holes.sort \
     | awk '{print $1 ":" $2-300 "-" $3+300}'` 
   echo "links to the three biggest voids in ${table}:"
   echo " (with 300 bp padding on each end)"
   foreach item ( $bigThree )
     echo "$url1$item$url2"
   end
   echo
 endif
   
 # clean up
 rm -f blockBedFile.bed
 rm -f gap.not.bed
 rm -f $table.not.bed