5adcf6bc2904690de7b7b30a83ec8a7a0996abe9
galt
  Tue Aug 21 00:01:25 2018 -0700
changing cse subdomain to soe

diff --git src/utils/qa/checkGenomeMysql src/utils/qa/checkGenomeMysql
index ac205ea..85b5a5e 100755
--- src/utils/qa/checkGenomeMysql
+++ src/utils/qa/checkGenomeMysql
@@ -16,42 +16,42 @@
 if [ $# -ne 1 ] 
 then
   echo -e "
 	checks genome-mysql servers for corrupted tables\n
 	Note: Due to the bash configurations in this 
 	script, if mysql encounters an error, the script
 	will immediately exit and will not check the 
 	rest of the tables in database. 
 	   usage: $(basename $0) database\n" >&2
   exit 1
 else
   db="$1"
 fi
 
 # make sure this is a valid database name
-if ! mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -Ne "show databases" | grep -qw $db
+if ! mysql --user=genome --host=genome-mysql.soe.ucsc.edu -A -Ne "show databases" | grep -qw $db
 then
   echo -e "\nERROR: database $db not found.\n" >&2
   exit 1
 fi
 
-tableList=$(mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -Ne "show tables" $db)
+tableList=$(mysql --user=genome --host=genome-mysql.soe.ucsc.edu -A -Ne "show tables" $db)
 
 # for each table in list do a select * limit 5.
 # Want to limit output or else the query would take forever. However,
 # can't do limit 1 since the first row of every table is stored in
 # the metadata and thus, mysql will not actually touch the table
 # if you do a select statement with a limit 1. Thus, we do a limit 5.
 # Throw away result of select statement and allow MySQL errors to be reported.
 # Also, genome-mysql is actually two hosts.  Check both.
 for ip in $(host genome-mysql.soe.ucsc.edu | awk '/has address/ {print $4}')
 do
   for table in $tableList
   do
     mysql --user=genome --host=$ip -A -Ne "select * from $table limit 5" \
         $db > /dev/null
 
-#PUT THIS BACK IF SD MACHINES COME BACK  mysql --user=genome --host=hgfs-sd.cse.ucsc.edu -A -Ne "select * from $table limit 5" \
+#PUT THIS BACK IF SD MACHINES COME BACK  mysql --user=genome --host=hgfs-sd.soe.ucsc.edu -A -Ne "select * from $table limit 5" \
 #      $db > /dev/null
   done
 done
 exit 0