5adcf6bc2904690de7b7b30a83ec8a7a0996abe9
galt
  Tue Aug 21 00:01:25 2018 -0700
changing cse subdomain to soe

diff --git src/utils/qa/gc-stats.pl src/utils/qa/gc-stats.pl
index b4fa475..fdb4ab0 100755
--- src/utils/qa/gc-stats.pl
+++ src/utils/qa/gc-stats.pl
@@ -1,28 +1,28 @@
 #!/usr/local/bin/perl5
 
 # Program: gc-stats.pl
 # Purpose: parses output of gene-check script into summary statistics
-# Test Protocal: http://genecats.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html
-# Summary results: http://genecats.cse.ucsc.edu/qa/test-results/gene-check.results.html
+# Test Protocal: http://genecats.soe.ucsc.edu/qa/test-protocols/gene-check.protocol.html
+# Summary results: http://genecats.soe.ucsc.edu/qa/test-results/gene-check.results.html
 # Author: Jennifer Jackson
 # Int Date: 2005-11-14
 # Rev Date: 2005-11-XX
 
 
 $documentation = "See test protocol documentation
-        http://genecats.cse.ucsc.edu/qa/test-protocols/gene-check.protocol.html";
+        http://genecats.soe.ucsc.edu/qa/test-protocols/gene-check.protocol.html";
 
 if ($#ARGV != 2) { die
 "\nUSAGE: $0 <genePreds_table> <gc-details> <gc-summary>
         Parses output of gene-check script into summary statistics
         Output <gc-stats> and <gc-report> are generated by program 
         STDERR is sent to screen
         <genePreds_table> file name format: pred_table.db.server.YYMMDD
 	<gc-details>      file name format: pred_table.db.server.YYMMDD.gc-details
         <gc-summary>      file name format: pred_table.db.server.YYMMDD.gc-summary
         <gc-stats>        file name format: pred_table.db.server.YYMMDD.gc-stats
         <gc-report>       file name format: pred_table.db.server.YYMMDD.gc-report
 	\nWhen complete, do the following to save your results ......	
 	1)Save the <gc-report> file in report directory:
         /usr/local/apache/htdocs-genecats/qa/test-results/gc-stats.results 
         2)Add the html contents of <gc-stats> into results file: