5adcf6bc2904690de7b7b30a83ec8a7a0996abe9
galt
  Tue Aug 21 00:01:25 2018 -0700
changing cse subdomain to soe

diff --git src/utils/qa/qaAutoTrack.sh src/utils/qa/qaAutoTrack.sh
index 722d5dd..e09fc9b 100755
--- src/utils/qa/qaAutoTrack.sh
+++ src/utils/qa/qaAutoTrack.sh
@@ -19,31 +19,31 @@
 ################################
 
 ##### Variables #####
 # Set by command-line options
 db=""
 tableName=""
 bigBedMode=""
 verboseMode=false
 overwriteLogUrl=false
 newLogDir=""
 
 # Other variables
 currDate=$(date +%F)
 currTime=$(date +%H_%M_%S)
 output="" # holds output message
-logUrl="http://genecats.cse.ucsc.edu/qa/test-results/qaAutoTrackLogs"
+logUrl="http://genecats.soe.ucsc.edu/qa/test-results/qaAutoTrackLogs"
 logDir="/usr/local/apache/htdocs-genecats/qa/test-results/qaAutoTrackLogs"
 currLogFile=""
 prevLogFile=""
 prevLogDate=""
 
 # Variables for issue checking
 issueNote=""
 tooOld=""
 percentDiff=""
 
 ##### Functions #####
 
 # Usage message function
 showHelp() {
 cat << EOF
@@ -61,31 +61,31 @@
 			 standard out as well as file.
 	-l log directory Alternate directory for output log
 	-u log url	 Alternate URL for output log.
 	-s		 Suppress URL in output. Will instead
 			 print directory in messages.
 
 Performs basic QA for auto-pushed tracks, which includes:
 - Checks when data for track was last updated
 - Coverage from featureBits -countGaps
 - Percentage difference in coverage between now and
   the last time the script was run
 
 By default, all results are output to a file and only issues
 are output to the command line. Use the "-v" option to see
 results on the command line as well. All log files are output to:
-http://genecats.cse.ucsc.edu/qa/test-results/qaAutoTrack.
+http://genecats.soe.ucsc.edu/qa/test-results/qaAutoTrack.
 
 Notes:
 	- For OMIM, ClinGen (formerly ISCA), or ClinVar tracks use omim, isca, or clinvar as the table name.
 	- If run more than once per day, then subsequent log files will include current time in name.
 
 EOF
 }
 
 # Output function
 function outputCovDiff () {
 	# four positional arguments. $1 == prevLogFile. $2 == tblCov. $3 == tableName. $4 == tblDate.
 	# Dependency: Coverage information from previous log file (positional argument $1)
 	# If no previous log file exists or if previous log file doesn't contain coverage info,
 	# then no coverage diff will be calculated and the percentDiff variable will retain its
 	# default value of ""