5adcf6bc2904690de7b7b30a83ec8a7a0996abe9 galt Tue Aug 21 00:01:25 2018 -0700 changing cse subdomain to soe diff --git src/utils/qa/qaEnsGenes.csh src/utils/qa/qaEnsGenes.csh index af8e644..382d16e 100755 --- src/utils/qa/qaEnsGenes.csh +++ src/utils/qa/qaEnsGenes.csh @@ -219,31 +219,31 @@ echo "table supports a separate track called: Ensembl Assembly." echo "Assemblies with a UCSC Gene track should also have a table called:" echo "knownToEnsembl. Here's what this assembly has:" echo hgsql -Ne "SHOW TABLES LIKE 'ensemblGeneScaffold'" $db hgsql -Ne "SHOW TABLES LIKE 'knownToEnsembl'" $db end # huge loop through each database # remember the hgFixed.trackVersion table echo "\n\n----------------------" echo "Don't forget to also push (to beta and then to the RR)" echo "the trackVersion table in the hgFixed database." echo "There are rows to allow the correct version number to be displayed in hgTrackUi." echo "Before you push the table, check the differences with compareWholeTable.csh hgFixed trackVersion" -echo "See Wiki for more details: http://genomewiki.cse.ucsc.edu/genecats/index.php/Ensembl_QA" +echo "See Wiki for more details: http://genomewiki.soe.ucsc.edu/genecats/index.php/Ensembl_QA" # make sure the date column has been updated echo "\n\n----------------------" echo "the dateReference column in the hgFixed.trackVersion table" echo "should say 'current' for your database (or all):" hgsql -Ne "SELECT db, dateReference FROM trackVersion WHERE version = $ver AND name = 'ensGene' ORDER BY db" hgFixed # check that the corresponding upstream MAF files have been updated echo "\n\n----------------------" echo "In conjunction with an Ensembl Gene update, some upstream MAF files need" echo "to be rebuilt. Specifically those for: ornAna1, fr2, gasAcu1, oryLat2" echo "Check for them here (look for new dates) there should be 3 for each db:" echo "hgwdev:/data/apache/htdocs-hgdownload/goldenPath/<db>/multiz*way/maf/ensGene.upstream?000.maf.gz" echo