File Changes for max

v370_base to v371_preview (2018-08-20 to 2018-08-27) v371

• src/browserbox/README.txt
  • lines changed 28, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 28, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/.bashrc
  • lines changed 7, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 7, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/.hg.conf
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/downloadTools
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/home/browser/gbibAddTools
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/addTools
  • lines changed 2, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 2, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/hg.conf.offline
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/mirrorTrack
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/updateBrowser.sh
  • lines changed 14, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 14, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/root/urlIsNotNewerThanFile
  • lines changed 1, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 1, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/usr/local/apache/cgi-bin/hg.conf
  • lines changed 4, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 4, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/browserbox/var/spool/cron/crontabs/root
  • lines changed 2, context: html, text, full: html, text
    e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d Tue Aug 21 13:18:40 2018 +0200
    moving all config files in GBIB to the new .gi.ucsc.edu domain names from the old .soe.ucsc.edu domain names. refs #21876 This commit only changes the versions of these files in the repo, not the ones in the actual browserbox, as they still need to get pushed into the browserbox, either by the pusing procedure from hgdownload or by the build meister when he builds the GBIB VM image. See http://genomewiki.ucsc.edu/genecats/index.php/Gbib_release#Release_config_changes_to_GbIb and the related pages in the genecats genomewiki.
  • lines changed 2, context: html, text, full: html, text
    687d35acc65ff6e5dc22e80c749549ff7d8886ef Tue Aug 21 13:36:58 2018 -0700
    Revert "moving all config files in GBIB to the new .gi.ucsc.edu domain names" Apparently there is no plan to create hgdownload.gi.ucsc.edu. The previous commit was completely useless. This reverts commit e1b3625f3a40bfee5c483284fa7f6b23bf6bd47d.
• src/hg/hgc/barChartClick.c
  • lines changed 6, context: html, text, full: html, text
    c3cba271647d7a8d2df940be434dc4f1970d2067 Fri Aug 24 17:40:09 2018 -0700
    fixing possible crash in hgc for bigBarChart, no redmine
  • lines changed 2, context: html, text, full: html, text
    2720d498ff1fcf6f91bfb68bed205788161baf99 Fri Aug 24 18:13:10 2018 -0700
    oops forgot to remove debugging printfs in the last commit
  • lines changed 6, context: html, text, full: html, text
    568ea79b380d977ebc8f3f35cb5cb20130c746c2 Fri Aug 24 18:46:16 2018 -0700
    fixing another barchart crash, when the size does not include the trailing newline, no redmine
• src/inc/bwgInternal.h
  • lines changed 1, context: html, text, full: html, text
    4a73fd653634412cc9ad0fc17aab320c3fb30be2 Fri Aug 24 17:42:31 2018 -0700
    making the wigToBigWig -clip option more tolerant to hg38 chroms with non-Hiram names, no redmine
• src/lib/bwgCreate.c
  • lines changed 33, context: html, text, full: html, text
    4a73fd653634412cc9ad0fc17aab320c3fb30be2 Fri Aug 24 17:42:31 2018 -0700
    making the wigToBigWig -clip option more tolerant to hg38 chroms with non-Hiram names, no redmine
• src/utils/wigToBigWig/wigToBigWig.c
  • lines changed 2, context: html, text, full: html, text
    4a73fd653634412cc9ad0fc17aab320c3fb30be2 Fri Aug 24 17:42:31 2018 -0700
    making the wigToBigWig -clip option more tolerant to hg38 chroms with non-Hiram names, no redmine