5381c2366c65d145243198819e45db1845598133
galt
  Mon Aug 27 16:23:19 2018 -0700
dregs of non-kent/src/ files for change cse to soe

diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf
index bf7218d..e9c2049 100644
--- confs/hgwdev.hg.conf
+++ confs/hgwdev.hg.conf
@@ -18,31 +18,31 @@
 include hg.conf.private
 
 allowHgMirror=1
 
 # temporary setting for QA, pending a better way to package dot 
 # with the browser (static binary?)
 graphvizPath=/usr/local/apache/cgi-bin/loader/dot_static
 
 # Transient setting that activates link on hgTracks and 
 # hgGateway for ENCODE/modENCODE survey (March 2010).
 # Remove survey setting to retire the survey.
 # survey=http://www.surveymonkey.com/s/XV666V5
 # surveyLabel=Take ENCODE Survey
 # survey=http://www.surveymonkey.com//s/XJF93F5
 # surveyLabel=Apply for free workshop
-# survey=http://genome-test.cse.ucsc.edu/goldenPath/help/image.html
+# survey=http://genome-test.soe.ucsc.edu/goldenPath/help/image.html
 # surveyLabel=<BR>Trouble viewing the browser? Reload this web page.
 # 2012-03-16: 
 # survey=https://www.surveymonkey.com/s/ucsc2012
 # surveyLabel=Survey.  Help us improve the Browser.
 #    survey=https://www.bit.ly/ucscTraining
 #    surveyLabel=More on-site workshops available!
 # survey=/index.html#newGateway
 # surveyLabel=New User Interface Coming May 10, 2016!
 #survey=https://www.surveymonkey.com/r/QYVSXKW
 #surveyLabel=Take our feedback survey!
 #surveyLabelImage=../images/surveyButton.jpg
 #survey=http://bit.ly/ucscTraining
 #surveyLabel= Request onsite workshops
 
 # if your MySQL system is configured for a different socket connection,
@@ -104,41 +104,41 @@
 #  value.
 
 login.systemName=hgLogin CGI
 login.browserName=genome-test Genome Browser
 login.browserAddr=http://genome-test.soe.ucsc.edu
 login.mailSignature=UCSC Genome Browser Administrator
 login.mailReturnAddr=genome-www@soe.ucsc.edu
 
 #Parameters for suggestion form
 suggest.mailSignature=UCSC Genome Browser Staff
 suggest.mailReturnAddr=genome-www@soe.ucsc.edu
 suggest.browserName=UCSC Genome Browser
 
 #wiki.host=genome.ucsc.edu
 wiki.host=HTTPHOST
-#wiki.host=genomewiki.cse.ucsc.edu
+#wiki.host=genomewiki.soe.ucsc.edu
 wiki.userNameCookie=wikidb_mw1_UserName
 wiki.loggedInCookie=wikidb_mw1_UserID
 wiki.sessionCookie=wikidb_mw1__session
 
 # wikiTrack function turned on 2009, set read-only June 2012
 wikiTrack.readOnly=yes
 #  URL is the wiki location for the article pages
 wikiTrack.URL=http://genomewiki.ucsc.edu
 # browser to return to from wiki created pages
-wikiTrack.browser=genome.cse.ucsc.edu
+wikiTrack.browser=genome.soe.ucsc.edu
 
 #  List of wiki user names that have super user edit privileges
 #	to wiki track items.  Currently this is only a delete item privilege.
 wikiTrack.editors=Hiram
 #  List of databases to enable the wikiTrack function
 wikiTrack.dbList=hg18,mm9,hg19
 
 # self destruct option June 2011.  To avoid problem of lost long running
 #	CGI processes.  Default CGI expiration time is 20 minutes,
 #	enable cgiExpireMinutes to change that default.
 #	A time of 0 indicates no expiration time.  positive integer only
 browser.cgiExpireMinutes=5
 
 # default for cgiTime printout to Apache error_log is "yes"
 # uncomment this cgiTime=no option to turn off the printouts to error_log
@@ -217,31 +217,31 @@
 # indicating an error occurs.
 browser.dumpStack=on
 # log signals
 signalsHandler=on
 
 # These settings enable geographic allele frequency images on the 
 # details pages for the HGDP Allele Frequency (hgdpGeo) track.
 # (HGDP = Human Genome Diversity Project)
 # Programs required for per-SNP geographic maps of HGDP population
 # allele frequencies:
 hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy
 hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster
 hgc.ghostscriptPath=/usr/bin/ghostscript
 
 # Customize your downloads.server machine name here
-downloads.server=hgdownload-test.cse.ucsc.edu
+downloads.server=hgdownload-test.soe.ucsc.edu
 
 # Temporary flag to help disable new custom track validator if needed
 # If you turn the flag off, it reverts to the old validator 
 newCustomTrackValidate=on
 
 # PROXY
 # enable http(s) proxy support in net.c
 #httpProxy=http://someProxyServer:3128
 #httpsProxy=http://someProxyServer:3128
 #ftpProxy=ftp://127.0.0.1:2121
 # if proxy server needs BASIC authentication
 #httpProxy=http://user:password@someProxyServer:3128
 #httpsProxy=http://user:password@someProxyServer:3128
 # if some domain suffixes should not be proxied:
 #noProxy=ucsc.edu,mit.edu,localhost,127.0.0.1