e0db353cfefb9bde9cce31d6a2c2d2762dc1de4a kate Wed Sep 12 17:19:14 2018 -0700 IMplement fieldName> expansion in trackDb url setting. refs #22078 diff --git src/hg/hgc/bigBedClick.c src/hg/hgc/bigBedClick.c index c07211a..9a4986cb 100644 --- src/hg/hgc/bigBedClick.c +++ src/hg/hgc/bigBedClick.c @@ -337,31 +337,30 @@ if (start == end) { // item is an insertion; expand the search range from 0 bases to 2 so we catch it: ivStart = max(0, start-1); ivEnd++; } struct bigBedInterval *bbList = bigBedIntervalQuery(bbi, chrom, ivStart, ivEnd, 0, lm); /* Get bedSize if it's not already defined. */ if (bedSize == 0) { bedSize = bbi->definedFieldCount; showUrl = TRUE; } - char *scoreFilter = cartOrTdbString(cart, tdb, "scoreFilter", NULL); int minScore = 0; if (scoreFilter) minScore = atoi(scoreFilter); /* Find particular item in list - matching start, and item if possible. */ boolean found = FALSE; boolean firstTime = TRUE; struct bigBedInterval *bb; for (bb = bbList; bb != NULL; bb = bb->next) { if (!(bb->start == start && bb->end == end)) continue; if (bedSize > 3) { @@ -399,64 +398,58 @@ // display seq1 and seq2 if (seq1Seq2 && bedSize+seq1Seq2Fields == 8) printf("<table><tr><th>Sequence 1</th><th>Sequence 2</th></tr>" "<tr><td> %s </td><td> %s </td></tr></table>", fields[6], fields[7]); else if (isNotEmpty(rest)) { char *restFields[256]; int restCount = chopTabs(rest, restFields); int restBedFields = bedSize - 3; if (restCount > restBedFields) { char **extraFields = (restFields + restBedFields); int extraFieldCount = restCount - restBedFields; int printCount = extraFieldsPrint(tdb,NULL,extraFields, extraFieldCount); - struct slPair* extraFieldPairs = getExtraFields(tdb, extraFields, extraFieldCount); printAllExternalExtraFields(tdb, extraFieldPairs); if (printCount == 0) { int i; char label[20]; safef(label, sizeof(label), "nonBedFieldsLabel"); printf("<B>%s </B>", trackDbSettingOrDefault(tdb, label, "Non-BED fields:")); for (i = restBedFields; i < restCount; i++) printf("%s%s", (i > 0 ? "\t" : ""), restFields[i]); printf("<BR>\n"); } } if (sameString(tdb->type, "bigGenePred")) bigGenePredLinks(tdb->track, item); } - - if (isCustomTrack(tdb->track)) { time_t timep = bbiUpdateTime(bbi); printBbiUpdateTime(&timep); } - } - if (!found) { printf("No item %s starting at %d\n", emptyForNull(item), start); } - lmCleanup(&lm); bbiFileClose(&bbi); } void genericBigBedClick(struct sqlConnection *conn, struct trackDb *tdb, char *item, int start, int end, int bedSize) /* Handle click in generic bigBed track. */ { char *fileName = bbiNameFromSettingOrTable(tdb, conn, tdb->table); bigBedClick(fileName, tdb, item, start, end, bedSize); } void bigBedCustomClick(struct trackDb *tdb) /* Display details for BigWig custom tracks. */ {