File Changes for hiram

v373_preview2 to v373_base (2018-10-15 to 2018-10-22) v373

• src/hg/inc/versionInfo.h
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    c66f3aa17c73ef4818516700180e50ffffad0e30 Mon Oct 22 10:09:03 2018 -0700
    New version number v373
• src/hg/makeDb/doc/galGal6/initialBuild.txt
  • lines changed 86, context: html, text, full: html, text
    a6734a481a1a646dfc51ea62e2661cfb3d159e18 Wed Oct 17 09:50:31 2018 -0700
    QA ready refs #22113
• src/hg/makeDb/doc/galGal6/lastzProcedures.txt
  • lines changed 73, context: html, text, full: html, text
    fe83e2d25c4a88169fc720c4ea28134e9f65e430 Mon Oct 22 09:56:58 2018 -0700
    document the parasol procedures refs #22113
• src/hg/makeDb/doc/galGal6/lastzRuns.txt
  • lines changed 3900, context: html, text, full: html, text
    6e84c8dc5d24b4e9acc51741ac2543d087e00dc8 Mon Oct 22 09:37:28 2018 -0700
    document the lastz/chain/net alignments refs #22113
• src/hg/makeDb/doc/galGal6/prepOne.pl
  • lines changed 151, context: html, text, full: html, text
    fe83e2d25c4a88169fc720c4ea28134e9f65e430 Mon Oct 22 09:56:58 2018 -0700
    document the parasol procedures refs #22113
• src/hg/makeDb/genbank/etc/hgwdev.dbs
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    909a19d1d1c1f1fdde8bb58c453b066a60053895 Mon Oct 15 13:46:39 2018 -0700
    Added galGal6 - chicken refs #22113
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    6631ff5b82f1a08eab3d99752631d35201d51216 Tue Oct 16 13:21:22 2018 -0700
    galGal6 does not yet have ensembl transcripts refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/chainNetBirds.ra
  • lines changed 882, context: html, text, full: html, text
    6ae2c01d76ce418f94d49ca30296e461b3c6bcc4 Sun Oct 21 22:14:25 2018 -0700
    initial look at the 77-way alignments refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/chainNetFish.ra
  • lines changed 178, context: html, text, full: html, text
    6ae2c01d76ce418f94d49ca30296e461b3c6bcc4 Sun Oct 21 22:14:25 2018 -0700
    initial look at the 77-way alignments refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/chainNetvertebrate.ra
  • lines changed 290, context: html, text, full: html, text
    6ae2c01d76ce418f94d49ca30296e461b3c6bcc4 Sun Oct 21 22:14:25 2018 -0700
    initial look at the 77-way alignments refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    8b8ba4a483d34b37d51759f6c119cddc490bec59 Tue Oct 16 18:59:38 2018 -0700
    adding crispr 10K track refs #22113
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    6ae2c01d76ce418f94d49ca30296e461b3c6bcc4 Sun Oct 21 22:14:25 2018 -0700
    initial look at the 77-way alignments refs #22113
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 4, context: html, text, full: html, text
    5dc85cf958d42a7478eeb079719003a776a697d2 Tue Oct 16 12:07:38 2018 -0700
    correctly honor the trackHub argument even if dbExists refs #18874
• src/hg/utils/automation/doCrispr.pl
  • lines changed 54, context: html, text, full: html, text
    ffac66398e499bf14aca0ff0dc2521797dae670d Mon Oct 15 14:36:48 2018 -0700
    add indexFa step for new genome sequence and add /dev/shm/ setup with the fasta and its index for kluster nodes refs #22113
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    0ed07b82cb5cb138e7157e885607ba32dca71660 Wed Oct 17 10:32:33 2018 -0700
    adding cleanup procedure refs #22113
• src/hg/utils/automation/doRecipBest.pl
  • lines changed 2, context: html, text, full: html, text
    5dc85cf958d42a7478eeb079719003a776a697d2 Tue Oct 16 12:07:38 2018 -0700
    correctly honor the trackHub argument even if dbExists refs #18874
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    c66f3aa17c73ef4818516700180e50ffffad0e30 Mon Oct 22 10:09:03 2018 -0700
    New version number v373
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 5, context: html, text, full: html, text
    926f508a32a3fdc5ce8bcebc8491e1634e48bd83 Mon Oct 22 10:08:15 2018 -0700
    v373 final build, refs #22231