File Changes for hiram

v373_preview to v373_preview2 (2018-10-08 to 2018-10-15) v373

• src/hg/makeDb/doc/galGal4.txt
  • lines changed 17, context: html, text, full: html, text
    7a45442415005118b879475afa1cbb84f9c9ccd1 Fri Oct 12 16:06:02 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
• src/hg/makeDb/doc/galGal5/initialBuild.txt
  • lines changed 17, context: html, text, full: html, text
    7a45442415005118b879475afa1cbb84f9c9ccd1 Fri Oct 12 16:06:02 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
• src/hg/makeDb/doc/galGal6/initialBuild.txt
  • lines changed 769, context: html, text, full: html, text
    cb7f38f2e42426735b9a5de331d06ddbc05c4a61 Thu Oct 11 14:02:13 2018 -0700
    beginning galGal6 browesr build refs #22113
  • lines changed 135, context: html, text, full: html, text
    9479014b18b6b48bb183329a2b894f31292af2ed Thu Oct 11 15:37:47 2018 -0700
    running up window masker refs #22113
  • lines changed 350, context: html, text, full: html, text
    7a45442415005118b879475afa1cbb84f9c9ccd1 Fri Oct 12 16:06:02 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
  • lines changed 19, context: html, text, full: html, text
    410d06109925b3a99e063d2ac27f92b957e0c5eb Fri Oct 12 16:10:48 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
  • lines changed 1, context: html, text, full: html, text
    12c19161dd1b662b976dcce119c851d1ccb3a340 Fri Oct 12 23:58:59 2018 -0700
    check redmine ssh connection refs #22113
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 83, context: html, text, full: html, text
    7a45442415005118b879475afa1cbb84f9c9ccd1 Fri Oct 12 16:06:02 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
• src/hg/makeDb/doc/mm10.txt
  • lines changed 72, context: html, text, full: html, text
    7a45442415005118b879475afa1cbb84f9c9ccd1 Fri Oct 12 16:06:02 2018 -0700
    lastz chainNet done to mm10 and hg38 and liftOvers to/from galGal4 and galGal5 refs #22113
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 21, context: html, text, full: html, text
    6eeca3ec7315996bc7e76c95215d920c2111be66 Fri Oct 12 09:31:34 2018 -0700
    Added galGal6; refs #22113
• src/hg/makeDb/schema/all.joiner
  • lines changed 8, context: html, text, full: html, text
    9b0815cd503439338725d82c611da38e644cabc5 Fri Oct 12 10:35:29 2018 -0700
    adding rules for galGal6 refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/description.html
  • lines changed 64, context: html, text, full: html, text
    41940a812e5b9409e157b816a620848de9dec366 Thu Oct 11 13:59:54 2018 -0700
    adding galGal6 to the build refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/gap.html
  • lines changed 32, context: html, text, full: html, text
    41940a812e5b9409e157b816a620848de9dec366 Thu Oct 11 13:59:54 2018 -0700
    adding galGal6 to the build refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/gold.html
  • lines changed 36, context: html, text, full: html, text
    41940a812e5b9409e157b816a620848de9dec366 Thu Oct 11 13:59:54 2018 -0700
    adding galGal6 to the build refs #22113
• src/hg/makeDb/trackDb/chicken/galGal6/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    41940a812e5b9409e157b816a620848de9dec366 Thu Oct 11 13:59:54 2018 -0700
    adding galGal6 to the build refs #22113
  • lines changed 5, context: html, text, full: html, text
    6ba2cd358801117b34cbc7cc18a709ae97465e1e Thu Oct 11 15:18:14 2018 -0700
    adding gold/assembly track search rule refs #22114
  • lines changed 2, context: html, text, full: html, text
    d6b65b0cc97f388f0c00fe0e88bfe4f8d7c7792e Fri Oct 12 10:07:21 2018 -0700
    turning on NCBI RefSeq composite gene track refs #22113
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    41940a812e5b9409e157b816a620848de9dec366 Thu Oct 11 13:59:54 2018 -0700
    adding galGal6 to the build refs #22113
• src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra
  • lines changed 270, context: html, text, full: html, text
    f91c75fd649cc147a59e292931f2cbe8a39585c8 Fri Oct 12 16:09:19 2018 -0700
    adding galGal6 chainNet definitions move chicken from default chainNet.ra to chainNet.birds.ra refs #22113
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 204, context: html, text, full: html, text
    f91c75fd649cc147a59e292931f2cbe8a39585c8 Fri Oct 12 16:09:19 2018 -0700
    adding galGal6 chainNet definitions move chicken from default chainNet.ra to chainNet.birds.ra refs #22113
• src/hg/utils/automation/openStack/credentials.txt
  • lines changed 61, context: html, text, full: html, text
    8cf9bb7a87f045afeb6357253b26f3f2bb39a6e5 Fri Oct 12 11:06:17 2018 -0700
    credentials file for OpenStack operations refs #18874
• src/hg/utils/automation/openStack/paraHubSetup.sh
  • lines changed 93, context: html, text, full: html, text
    48639b58527ff2ddb758b2925b5a2801bc0acb7c Fri Oct 12 11:18:51 2018 -0700
    updated to newer OpenStack installation refs #18874
• src/hg/utils/automation/openStack/paraNodeSetup.sh.template
  • lines changed 82, context: html, text, full: html, text
    f4702bd800eda6eb0871b712fc3748370c145e3d Fri Oct 12 11:15:22 2018 -0700
    updated to newer OpenStack installation refs #18874
• src/hg/utils/automation/openStack/startParaHub.sh
  • lines changed 118, context: html, text, full: html, text
    a5bc3e2ebb8f19b1e8285a84e6311fb1c00bd2d4 Fri Oct 12 11:20:50 2018 -0700
    updated to newer OpenStack installation refs #18874
• src/hg/utils/automation/openStack/startParaNode.sh
  • lines changed 131, context: html, text, full: html, text
    662563da92b60f6dad101605fb1e368414936d56 Fri Oct 12 11:21:54 2018 -0700
    updated to newer OpenStack installation refs #18874