Commits for hiram

v373_base to v374_preview (2018-10-22 to 2018-10-29) v374

8e5101950685b73746f0706b9a5bab3f8914202f Tue Oct 23 08:14:43 2018 -0700

• update versions for oreNil3 danRer11 petMar3 refs #22113
  • src/hg/utils/phyloTrees/220.nh - lines changed 3, context: html, text, full: html, text

df3d6856d87243e72163eebd98afbb07a686458f Tue Oct 23 08:16:08 2018 -0700

• update versions for oreNil3 danRer11 petMar3 refs #22113
  • src/hg/utils/phyloTrees/220way.nh - lines changed 220, context: html, text, full: html, text

84167a3182d35b2b9b066fb982a6c60c902ad218 Tue Oct 23 08:19:54 2018 -0700

• update versions for oreNil3 danRer11 petMar3 refs #22113
  • src/hg/utils/phyloTrees/220.nh - lines changed 220, context: html, text, full: html, text

0da2852f872b3474296bd8b2a0f9aac3f233c67c Tue Oct 23 08:22:35 2018 -0700

• update versions for oreNil3 danRer11 petMar3 refs #22113
  • src/hg/utils/phyloTrees/220way.dissect.txt - lines changed 3073, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/220wayChainNet.pl - lines changed 220, context: html, text, full: html, text

1b27483d2c7d077c32adc4817a64e023fac41e78 Tue Oct 23 08:26:52 2018 -0700

• update to galGal6 version refs #22113
  • src/hg/utils/phyloTrees/220way.nh - lines changed 1, context: html, text, full: html, text

f9eae2bc2cc119b9ed40085ee34ab7c4f95b19ae Tue Oct 23 08:28:02 2018 -0700

• update to galGal6 version refs #22113
  • src/hg/utils/phyloTrees/220way.dissect.txt - lines changed 1, context: html, text, full: html, text

34e34a643f83b80c8f66e679a60f516d18ceaeba Wed Oct 24 16:48:27 2018 -0700

• adding crispr10K track no redmine
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

f8c612fa0ef63fe2757577596870176c4771f506 Wed Oct 24 16:49:01 2018 -0700

• begin cotJap2 browser build refs#22330
  • src/hg/makeDb/doc/cotJap2/initialBuild.txt - lines changed 995, context: html, text, full: html, text

3276dead272731f3623e4daa113126437a6557be Wed Oct 24 17:14:08 2018 -0700

• adding cotJap2 to the build refs #22330
  • src/hg/makeDb/trackDb/birds/cotJap2/description.html - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/cotJap2/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/cotJap2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/cotJap2/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text

5248d8e2fb462eb0c395fa2e1abfdb6c310f2053 Wed Oct 24 17:18:45 2018 -0700

• starting RM and TRF refs #22330
  • src/hg/makeDb/doc/cotJap2/initialBuild.txt - lines changed 42, context: html, text, full: html, text

1b2820fcaad8632882798da14989819208ebf844 Thu Oct 25 09:06:01 2018 -0700

• Added cotJap2 Japanese quail/Coturnix japonica; refs #22330
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text

571173f615ba1fc31524836f3a7521bc596013ef Thu Oct 25 09:08:26 2018 -0700

• started crispr 10K shoulders no redmine
  • src/hg/makeDb/doc/hg19.txt - lines changed 8, context: html, text, full: html, text

a16bf016ee72eac7c0053f21d142d76e6793ea13 Thu Oct 25 09:09:33 2018 -0700

• Added cotJap2 - Japanese quail refs #22330
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text

4142e1adea3b5210fa0eae4ed0e8fa2b889617fc Thu Oct 25 11:26:54 2018 -0700

• adding gold/assembly track search rule refs #22330
  • src/hg/makeDb/trackDb/birds/cotJap2/trackDb.ra - lines changed 5, context: html, text, full: html, text

cf21e85f33d81a16379fb7cde54fac3fd861550e Thu Oct 25 11:32:02 2018 -0700

• add ncbiRefSeq composite refs #22330
  • src/hg/makeDb/trackDb/birds/cotJap2/trackDb.ra - lines changed 2, context: html, text, full: html, text

7841ce711e06cb1ca0c93c2de79e92597e6f3e91 Thu Oct 25 11:35:13 2018 -0700

• adding rules for cotJap2 refs #22330
  • src/hg/makeDb/schema/all.joiner - lines changed 11, context: html, text, full: html, text

ee06b3b88b21d70366aa67855ef263b2d4a4afa3 Mon Oct 29 09:59:36 2018 -0700

• v374 preview1, refs #22231
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text