Commits for angie

v374_preview to v374_preview2 (2018-10-29 to 2018-11-05) v374

c04aef0e2bfd567e281ddd1af11b3e878ff4dde5 Wed Oct 31 15:27:53 2018 -0700

• Use hvGfxContrastingColor() instead of whiteIndex() for base coloring text so it's not invisible on light-colored PSL tracks.
  • src/hg/hgTracks/cds.c - lines changed 4, context: html, text, full: html, text

e2f94af74afe8775b7b2b087f56ca3a1323a88bc Wed Oct 31 16:07:35 2018 -0700

• Changing Fix Patches track to yellow, vis pack and Alt Haplotypes alignment track to vis dense, per Jim. Changing existing patch/alt tracks in hg19 and hg38 to release beta,public. refs #18854
  • src/hg/makeDb/trackDb/human/hg19/hg19Patch13.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 14, context: html, text, full: html, text

dc10667b65395ddad3445a55cd2a2c16a3715103 Fri Nov 2 15:10:20 2018 -0700

• Restricting use of tName in getAlignments query to doPslAltSeq only, after Braney pointed out in code review that changing the default behavior is not wise. refs CR #22353
  • src/hg/hgc/hgc.c - lines changed 16, context: html, text, full: html, text