daf86f8075efae8886a3d88dc0ab6b763dd6cb1c
brianlee
  Wed Dec 5 16:08:35 2018 -0800
Changing hgGateway to hgBlat to allow htmlcheck getVars to return hgsid, in the past in 2007 when this script was working it would return values, but hgGateway changed, so update allows hgsid to be assigned in this code, discovered by Hiram and Conner in reviewing error logs.

diff --git src/utils/qa/checkTrackUiLinks.csh src/utils/qa/checkTrackUiLinks.csh
index 964c568..9a92c24 100755
--- src/utils/qa/checkTrackUiLinks.csh
+++ src/utils/qa/checkTrackUiLinks.csh
@@ -1,148 +1,148 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ################################
 #  
 #  01-24-07
 #  Robert Kuhn
 #
 #  checks all links on trackUi pages for a track
 #
 ################################
 
 onintr cleanup
 
 set tableinput=""
 set tables=""
 set machine="hgwbeta"
 set host=""
 set rr="false"
 set baseUrl=""
 set target=""
 set cgi=""
 set hgsid=""
 set db=""
 set pgsWErrors=0
 set pgsChkd=0
 
 if ( $#argv < 2 || $#argv > 3 ) then
   echo
   echo "  checks all links on trackUi pages for a track."
   echo
   echo "    usage:  database tablelist [machine]"
   echo '           tablelist may also be single table or "all"'
   echo "           machine defaults to hgwbeta"
   echo
   echo '    note: includes assembly description.html page if "all"'
   echo
   exit
 else
   set db=$argv[1]
   set tableinput=$argv[2]
 endif
 
 if ( "$HOST" != "hgwdev" ) then
  echo "\n error: you must run this script on dev!\n"
  exit 1
 endif
 
 # check for valid db
 set url1="http://"
 set url2=".soe.ucsc.edu/cgi-bin/hgTables?db=$db&hgta_doMetaData=1"
 set url3="&hgta_metaDatabases=1"
 set url="$url1$machine$url2$url3"
 wget -q -O /dev/stdout "$url" | grep $db > /dev/null
 if ( $status ) then
   echo
   echo "  ${db}: no such database on $machine"
   echo
   exit 1
 endif
 
 # set machine name and check validity
 if ( $#argv == 3 ) then
   set machine="$argv[3]"
   checkMachineName.csh $machine
   if ( $status ) then
     exit 1
   endif
 endif
 
 # check if it is a file or a tablename and set list
 file $tableinput | egrep "ASCII text" > /dev/null
 if (! $status) then
   set tables=`cat $tableinput`
 else
   set tables=$tableinput
 endif
 
 # set hgsid so don't fill up sessionDb table
 set baseUrl="http://$machine.soe.ucsc.edu"
-set hgsid=`htmlCheck  getVars $baseUrl/cgi-bin/hgGateway | grep hgsid \
+set hgsid=`htmlCheck  getVars $baseUrl/cgi-bin/hgBlat | grep hgsid \
   | head -1 | awk '{print $4}'`
 
 echo "hgw1 hgw2 hgw3 hgw4 hgw5 hgw6" | grep $machine
 if ( $status ) then
   set rr="true"
 endif
 
 # process descriptions page for "all" choice
 if ( "all" == $tableinput ) then
   if ( "hgwdev" != "$machine" ) then
     set host="-h $sqlbeta"
   endif
   set tables=`hgsql $host -Ne "SELECT tableName FROM trackDb WHERE html != ''" $db`
   set tables="description.html $tables"
 endif
 
 # check links on all table.html pages
 foreach table ( $tables )
   rm -f errorsOnPg$$
   if ( $table == "description.html" ) then
     set cgi="hgGateway?hgsid=$hgsid&db=$db"
   else
     set cgi="hgTrackUi?hgsid=$hgsid&db=$db&g=$table"
   endif
   set target="$baseUrl/cgi-bin/$cgi"
   htmlCheck getLinks "$target" | egrep "ftp:|http:" | grep -v ucsc > $db.$table.outsideLinks$$
 
   if ( ! -z  $db.$table.outsideLinks$$ ) then
     foreach link ( `cat $db.$table.outsideLinks$$` )
       echo "$link" >>& errorsOnPg$$
       htmlCheck ok "$link" >>& errorsOnPg$$
     end
     egrep -B1 -v "ftp:|http:" errorsOnPg$$ > /dev/null
     if ( ! $status ) then
       echo $table
       echo "=============="
       grep -B1 -v http errorsOnPg$$
       echo
       @ pgsWErrors= $pgsWErrors + 1
     endif
   endif
   @ pgsChkd= $pgsChkd + 1
   rm -f errorsOnPg$$
   rm -f $db.$table.outsideLinks$$
 end
 
 echo "Summary"
 echo "======= ======="
 if ( $pgsChkd == 1 ) then
   echo $pgsChkd "page checked"
 else
   echo $pgsChkd "pages checked"
 endif
 if ( $pgsWErrors > 0 ) then
   if ( $pgsWErrors == 1 ) then
     echo $pgsWErrors "page with error(s) found"
   else
     echo $pgsWErrors "pages with errors found"
   endif
 else
   echo "No errors found!"
 endif
 echo
 
 cleanup:
 rm -f error$$
 rm -f $db.$table.outsideLinks$$