a2005a50d859471971af5226377e68cd241ed2e5
chmalee
  Wed Nov 14 15:33:39 2018 -0800
hgdownload-euro is online now so allow gbibs to load from there, refs jorge's presentation

diff --git src/browserbox/root/updateBrowser.sh src/browserbox/root/updateBrowser.sh
index 1197904..59d8e7e 100755
--- src/browserbox/root/updateBrowser.sh
+++ src/browserbox/root/updateBrowser.sh
@@ -475,25 +475,27 @@
    echo allowHgMirror=true > /usr/local/apache/cgi-bin/hg.conf.local
 fi
 
 # Sept 2017: check if genome-euro mysql server is closer
 if [ ! -f /usr/local/apache/trash/registration.txt ]; then
    # Mar 2018:  check if we can connect to genome-euro before checking what is closest
    curl -sSI genome-euro.ucsc.edu 2>&1 > /dev/null
    if [[ $? -eq 0 ]]; then
       echo comparing latency: genome.ucsc.edu Vs. genome-euro.ucsc.edu
       euroSpeed=$( (time -p (for i in `seq 10`; do curl -sSI genome-euro.ucsc.edu > /dev/null; done )) 2>&1 | grep real | cut -d' ' -f2 )
       ucscSpeed=$( (time -p (for i in `seq 10`; do curl -sSI genome.ucsc.edu > /dev/null; done )) 2>&1 | grep real | cut -d' ' -f2 )
       if [[ $(awk '{if ($1 <= $2) print 1;}' <<< "$euroSpeed $ucscSpeed") -eq 1 ]]; then
          echo genome-euro seems to be closer
          echo modifying gbib to pull data from genome-euro instead of genome
          sed -i s/slow-db.host=genome-mysql.soe.ucsc.edu/slow-db.host=genome-euro-mysql.soe.ucsc.edu/ /usr/local/apache/cgi-bin/hg.conf
+         # Nov 2018: hgdownload-euro is online now
+         sed -i 's#gbdbLoc2=http://hgdownload.soe.ucsc.edu/gbdb/#gbdbLoc2=http://hgdownload-euro.soe.ucsc.edu/gbdb/#' /usr/local/apache/cgi-bin/hg.conf
       else
          echo genome.ucsc.edu seems to be closer
          echo not modifying /usr/local/apache/cgi-bin/hg.conf
       fi
    fi
 fi
 
 touch /root/lastUpdateTime.flag
 echo - GBiB update done
 cat /etc/issue | tr -s '\n'