Commits for jnavarr5

v374_base to v375_preview (2018-11-12 to 2018-11-26) v375

150b8291d3441215005e141c831fe86b2b7aafb4 Tue Nov 13 14:29:38 2018 -0800

• Updating redirected links for hg18, uiLinks cronjob.
  • src/hg/makeDb/trackDb/allenBrainAli.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60PvalStrict.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SignalStrict.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChIpHl60SitesStrict.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyChipSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSignal.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSites.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeAffyEcSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspFull.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspPartial.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspSuper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeEgaspUpdate.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeGencodeGeneOct05.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeGencodeIntronOct05.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodePseudogene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUncFaire.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUtexChip.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeUtexChipSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Pval.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sig.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/encodeYaleChIPSTAT1Sites.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/evofold.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/gwasCatalog.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hapmapSnps.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/HInvGeneMrna.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/chainSelf.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cnp.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/cons44way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/consIndelsHgMmCanFam.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSignal.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeAffyRnaTransfrags.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeBUORChID.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeNhgriDukeDnaseHs.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeSangerChip.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUCDavisChip.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipHits.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcDavisChipSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeUcsdNgGif.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSites.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/evofoldV2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/exoniphy.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/knownGene.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/mammalPsg.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/mostConserved28way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/multiz17way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/multiz28way.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/pgSnp.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/phastConsElements17way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/phyloPCons28way.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOcc.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccA375.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccDennis.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/uwNucOccMec.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeGisChipPetAll.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgRna.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/phastBias.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeNhgriBip.html - lines changed 1, context: html, text, full: html, text

9715fefeb6ae95dea8c70045a0fc6754d86e4352 Thu Nov 15 08:31:53 2018 -0800

• Updating redirected links for xenTro1, uiLinks cronjob.
  • src/hg/makeDb/trackDb/xenTro/xenTro1/multiz5way.html - lines changed 4, context: html, text, full: html, text

fb554b3617fdfc9144820c203542c1842db73573 Fri Nov 16 09:12:47 2018 -0800

• Announcing the GENCODE Genes track for hg38, refs #21644
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 16, context: html, text, full: html, text
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text

217f7d6b4dbb3f78b279f5ff1337cd3c8f4ed645 Fri Nov 16 09:39:15 2018 -0800

• Adding changes from the knownGene.alpha.html file to the regular knownGene.html page now that it is about to be released, refs #21644
  • src/hg/makeDb/trackDb/human/hg38/knownGene.html - lines changed 59, context: html, text, full: html, text

54bdcddbe937303aad89cf633a4da5059bac4fbd Fri Nov 16 09:40:06 2018 -0800

• Releasing GENCODE Genes v29 for hg38, refs #21644
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

8ade3e0c8fb3af3ac175fb8acf4825f6dbe3cb59 Fri Nov 16 10:40:39 2018 -0800

• Fixing a typo. There was an extra 'the' in my announcement, refs #21644
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

9b05932a3ce8f91b8439025e79d07b895f295561 Fri Nov 16 10:44:15 2018 -0800

• Adding a missing 'of', refs #21644
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 1, context: html, text, full: html, text

e671bbe1e2af074e2785616d8cc484a3c2b75f86 Mon Nov 19 09:41:07 2018 -0800

• Updating redirected links for eboVir3, uiLinks cronjob.
  • src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/muPIT.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/pdb.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spAnnot.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spMut.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir3/spStruct.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/patSeq.html - lines changed 1, context: html, text, full: html, text

afa40a3fb3e52177c538f6319f9d95958aa9cee1 Mon Nov 19 15:32:01 2018 -0800

• Updating redirected links and broken links on the snp151 shared html page, refs #21010
  • src/hg/makeDb/trackDb/human/snp151.shared.html - lines changed 9, context: html, text, full: html, text

9250fc99f7660eef25ee58b9751804e80866be16 Tue Nov 20 09:19:01 2018 -0800

• Updating redirected links for dm3, uiLinks cronjob, no Redmine.
  • src/hg/makeDb/trackDb/drosophila/bdtnpChipper.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/bdtnpChipperOld.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/bdtnpDnase.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/evofold.html - lines changed 1, context: html, text, full: html, text

5429df7fc7bdb3621ad921c66b0c2213fe42d8c7 Wed Nov 21 08:44:46 2018 -0800

• Updating redirected links for gorGor3, uiLinks cronjob.
  • src/hg/makeDb/trackDb/geneid.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/cons11way.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/gold.html - lines changed 1, context: html, text, full: html, text

519146c3d3191aff600e08fd428a71f0689c1b3f Mon Nov 26 09:35:27 2018 -0800

• Updating redirected links for ce2, uiLinks cronjob.
  • src/hg/makeDb/trackDb/worm/ce2/axtNetCb1.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/blastzCb1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/c_briggsae_pwMaf.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/chainCb1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/netCb1.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/picTar.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/sangerGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/sangerGenefinder.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/ce2/wabaCbr.html - lines changed 2, context: html, text, full: html, text