3168dd0559705837dccfb2e783b8d5e4212356a2 kate Mon Dec 17 19:10:34 2018 -0800 Add description line for each track and hub. refs #22678 diff --git src/hg/htdocs/gtex.html src/hg/htdocs/gtex.html index 47bbe8a..3e78a3f 100755 --- src/hg/htdocs/gtex.html +++ src/hg/htdocs/gtex.html @@ -33,45 +33,52 @@ <a target="_blank" href="../gtexBodyMap.html"><img src="../images/gtexBodyMap.svg" alt="GTEx Body Map"> --> <p class="text-center"> <object id="bodyMapSvg" type="image/svg+xml" data="<!--#echo var="ROOT" -->/images/gtexBodyMapPage.svg"></object> <!--<div class="gbmCredit">Credit: jwestdesign</div> --> </p> </div> <div class="col-md-6"> <div class="row"> <h2>GTEx data at UCSC</h2> <ul> <li><a target="_blank" href="../cgi-bin/hgGtexTrackSettings?db=hg19&g=gtexGene#INFO_SECTION"> GTEx Gene track</a></li> + <dd>Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)</dd> <li><a target="_blank" - href="../cgi-bin/hgGtexTrackSettings?db=hg19&g=gtexTranscExpr#INFO_SECTION"> + href="../cgi-bin/hgTrackUi?db=hg19&g=gtexTranscExpr#TRACK_HTML"> GTEx Transcript track</a></li> + <dd>Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)</dd> <li><a target="_blank" - href="../cgi-bin/hgTrackUi?db=hg19&g=gtexEqtlCluster#TRACK_HTML"> + href="../cgi-bin/hgGtexTrackSettings?db=hg19&g=gtexEqtlCluster#INFO_SECTION"> GTEx Combined eQTL track</a></li> + <dd>Combined Expression QTLs from 44 Tissues from GTEx</dd> <li><a target="_blank" href="../cgi-bin/hgTrackUi?db=hg19&g=gtexEqtlTissue#TRACK_HTML"> GTEx Tissue eQTL track</a></li> + <dd>Expression QTLs in 44 tissues from GTEx </dd> <li><a target="_blank" href="http://hgdownload.soe.ucsc.edu/hubs/gtex/gtexHub.html"> GTEx Signal hub</a></li> + <dd>GTEx RNA-seq of 53 tissues (570 donors)</dd> <li><a target="_blank" href="http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/gtexAnalysisHub.html"> GTEx Analysis hub</a></li> + <dd>Allele-Specific Expression in 53 Tissues from GTEx Analysis</dd> + <dd>Distant variants affecting gene expression (trans-eQTLs) from GTEx Analysis</dd> </ul> </div> <div class="row"> <h2>GTEx in the browser</h2> <p> Below is a screenshot of a <a target="_blank" href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=kate&hgS_otherUserSessionName=GTEx%20demo%20for%20blog"> public session</a> that highlights the GTEx gene expression track and GTEx RNA-seq signal hub for the <a target="_blank" href="http://genome.ucsc.edu/blog/gtex-resources-in-the-browser/">GTEx Resources in the Genome Browser blog article</a>. The session shows a genomic region where 5 genes exhibit different patterns of tissue-specific expression. <p class="text-center"> <img src="../images/gtexBlogSession.png" width="540px" height="424px"></p> </div> </div>