Commits for hiram

v377_preview2 to v377_base (2019-01-28 to 2019-02-04) v377

17796a0436ab2b1f767d2e571739e2a0c8bdb6ed Mon Jan 28 11:19:07 2019 -0800

• compact the hubPublicJsonOutput() as it becomes more generic refs #18869
  • src/hg/hubApi/hubApi.c - lines changed 82, context: html, text, full: html, text

77f17523d1115eb2fb85eaf747a76db0c6328204 Mon Jan 28 14:05:59 2019 -0800

• ready to start listing other things refs #18869
  • src/hg/hubApi/hubApi.c - lines changed 72, context: html, text, full: html, text
  • src/hg/hubApi/makefile - lines changed 2, context: html, text, full: html, text

d81224bc20f1c0d172c39c36d2bbe2065a8a2274 Mon Jan 28 14:10:37 2019 -0800

• adding first test refs #18869
  • src/hg/hubApi/tests/expected.json.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 7, context: html, text, full: html, text

bf7b450d396d8fe15d5198d3e4a55d8ac864e6b3 Mon Jan 28 14:55:21 2019 -0800

• now output genome list for any hub refs #18869
  • src/hg/hubApi/hubApi.c - lines changed 32, context: html, text, full: html, text

0e7f2b9590af8c526238af8a414b004a20b09f4f Tue Jan 29 11:22:12 2019 -0800

• fix checking of length of user name after URL encoding refs #22867
  • src/hg/hgLogin/hgLogin.c - lines changed 7, context: html, text, full: html, text

4cb561203efce23398fe8328be64e15dbb06e98d Tue Jan 29 15:22:55 2019 -0800

• now with /list/tracks function example refs #18869
  • src/hg/hubApi/hubApi.c - lines changed 131, context: html, text, full: html, text

04f101fef2804c8262f593b5d4e2a4cc6b5ed75a Tue Jan 29 17:44:46 2019 -0800

• must have scoreFilter specified to make scoreFilterByRange work refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/aaCounts.ra - lines changed 1, context: html, text, full: html, text

ea3e5911994d95f20e8ee78344cf022b87ec2d6b Wed Jan 30 15:29:26 2019 -0800

• initial tables for description page refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html - lines changed 1947, context: html, text, full: html, text

99bb697538c4f9d867a0997046ca2d9af4e57d0c Wed Jan 30 15:55:49 2019 -0800

• now with NCBI assembly outlinks refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html - lines changed 741, context: html, text, full: html, text

400c756f8f81526ed6b2be191dd87fb7dddaf643 Fri Feb 1 10:57:01 2019 -0800

• do not work on a tdb that is a NULL pointer in matchTableOrHandler() refs #22881
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text

16a3c155e59fd909d698be936e2e8b2a16683a45 Sat Feb 2 15:26:48 2019 -0800

• adding protein blat bigPsl display refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/protBlat0.ra - lines changed 1647, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bacteria/staAur2/protBlat1.ra - lines changed 1719, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bacteria/staAur2/trackDb.ra - lines changed 7, context: html, text, full: html, text

cc7e9e4e1b0b383a45a448ac1f1376608a2b9230 Sat Feb 2 15:28:11 2019 -0800

• no colorByStrand for genePred refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/trackDb.ra - lines changed 3, context: html, text, full: html, text

d1a623d318d18c9136bc12d5aae95acf936d67ba Mon Feb 4 09:54:50 2019 -0800

• v377 final build, refs #NNNNN
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

4563dcac2feca42b6cb92fd296b314b4e82c731f Mon Feb 4 09:55:41 2019 -0800

• New version number v377
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text