5b83a4f3758e71c48c76f3235f7a1924c21b4ae2
angie
  Tue Jan 15 13:21:18 2019 -0800
Implement liftOver -multiple -genePred; update gtexGeneModel with all the alts/patches.  refs #18855

diff --git src/hg/inc/liftOver.h src/hg/inc/liftOver.h
index 9303e3e..914cfd2 100644
--- src/hg/inc/liftOver.h
+++ src/hg/inc/liftOver.h
@@ -91,31 +91,31 @@
  * and results in retChrom, retStart, retEnd.  Otherwise
  * return a string describing the problem. */
 
 void liftOverGff(char *fileName, struct hash *chainHash, 
                     double minMatch, double minBlocks, 
                     FILE *mapped, FILE *unmapped);
 /* Lift over GFF file */
 
 void liftOverPsl(char *fileName, struct hash *chainHash, 
                             double minMatch, double minBlocks, bool fudgeThick,
                                 FILE *f, FILE *unmapped);
 /* Open up PSL file, and lift it. */
 
 void liftOverGenePred(char *fileName, struct hash *chainHash, 
                         double minMatch, double minBlocks, bool fudgeThick,
-                        FILE *mapped, FILE *unmapped);
+                      FILE *mapped, FILE *unmapped, boolean multiple);
 /* Lift over file in genePred format. */
 
 void liftOverSample(char *fileName, struct hash *chainHash, 
                         double minMatch, double minBlocks, bool fudgeThick,
                         FILE *mapped, FILE *unmapped);
 /* Open up sample file,  and lift it */
 
 void readLiftOverMap(char *fileName, struct hash *chainHash);
 /* Read map file into hashes. */
 
 char *liftOverErrHelp();
 /* Help message explaining liftOver failures */
 
 
 #endif