Commits for hiram

v376_base to v377_preview (2019-01-14 to 2019-01-21) v377

0d06e40e9e79ec541bc0c2cf3aeb6de6abf7ff5e Tue Jan 15 08:35:09 2019 -0800

• change Brian to Ann no redmine
  • src/utils/qa/weeklybld/summaryEmail.sh - lines changed 1, context: html, text, full: html, text

cf6f1b6a00597520c9aaee1341f7d6f73eb2936f Wed Jan 16 08:59:05 2019 -0800

• turn on scoreFilterByRange refs #19937
  • src/hg/makeDb/trackDb/bacteria/staAur2/aaCounts.ra - lines changed 1, context: html, text, full: html, text

106e6128a61176495e8ddd3f13b3862fd3f6d587 Wed Jan 16 13:12:13 2019 -0800

• adding ensembl names to chromAlias for v95 release refs #22425
  • src/hg/makeDb/doc/equCab3/initialBuild.txt - lines changed 15, context: html, text, full: html, text

c12ab64bd4bbefaff15dc6de28a4dbc583da29f5 Wed Jan 16 13:16:18 2019 -0800

• adding ensembl names to chromAlias for v95 release refs #22425
  • src/hg/makeDb/doc/felCat9/initialBuild.txt - lines changed 25, context: html, text, full: html, text

4421fc450b5adaaff65e6355fef5313ce915449f Wed Jan 16 13:36:19 2019 -0800

• adding ensembl names to chromAlias for v95 release and fix chrM name for genbank/INSDC refs #22425
  • src/hg/makeDb/doc/fr3.txt - lines changed 52, context: html, text, full: html, text

9c0b0c5645ae6a5f1a3f4fc15817b04251bce1d8 Wed Jan 16 13:44:58 2019 -0800

• adding ensembl names to chromAlias for v95 release refs #22425
  • src/hg/makeDb/doc/galGal6/initialBuild.txt - lines changed 16, context: html, text, full: html, text

7af1fe0ba4a77dd278d94911768f29ae720345cb Thu Jan 17 11:25:15 2019 -0800

• add note about kmer generated phylip phyloTree refs #18874
  • src/hg/makeDb/trackDb/drosophila/dm6/cons124way.html - lines changed 10, context: html, text, full: html, text

bdad28edfe7c905ec4c4a038ede65668fd3e0789 Thu Jan 17 14:07:13 2019 -0800

• add notes for v95 release refs #22761
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 287, context: html, text, full: html, text

3780663c60d09f782fe8d0a84002dcc1ca7a464b Fri Jan 18 15:19:22 2019 -0800

• initial experiment to see if hub structures can be found and examined refs #18869
  • src/hg/hubApi/hubApi.c - lines changed 135, context: html, text, full: html, text
  • src/hg/hubApi/makefile - lines changed 18, context: html, text, full: html, text

1a112d241dfe176a9958648ecf192f18ff419b4b Fri Jan 18 19:33:08 2019 -0800

• revert most recent change for further review refs #22774
  • src/hg/hgc/lowelab.c - lines changed 1, context: html, text, full: html, text

a33ebfc0cd07ff0df7dc721351ace0224a928796 Fri Jan 18 19:35:55 2019 -0800

• revert most recent change for further review refs #22774
  • src/hg/nci60/findStanAlignments.c - lines changed 2, context: html, text, full: html, text

a51d7df14060b4c345bebd24e88f43d2e3b514ed Mon Jan 21 14:47:04 2019 -0800

• v377 preview1, refs #22774
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text