55e011984f93b9a7310176e5d29e8c45597e20e0 jcasper Wed Jan 23 14:35:50 2019 -0800 Adding automatically-updated copies of the hg.conf files from our European and Asian mirror servers, no ticket diff --git confs/asia.hg.conf confs/asia.hg.conf new file mode 100644 index 0000000..339b84c --- /dev/null +++ confs/asia.hg.conf @@ -0,0 +1,122 @@ +# +# This file is installed and updated by cfengine. Do not make changes here! +# The original file is on kkstore, under the directory: +# kkstore:/var/cfengine/files/RR/data/apache/cgi-bin/hg.conf +# Make changes there! +# +# Config file for the UCSC Human Genome server +# +# the format is in the form of name/value pairs +# written 'name=value' (note that there is no space between +# the name and its value. Also, no blank lines should be in +# this file +########################################################### + +include hg.conf.private + +# trackDb table to use +db.trackDb=trackDb +# Comment out to disable new double/query insert highlighting options: +browser.indelOptions=on + +# /data/tmp is the default tmpdir location, change this if desired elsewhere. +# What you want is for it to be on a local filesystem, and it must be +# read/write/delete enabled for the Apache browser effective user + + +# Programs required for per-SNP geographic maps of HGDP population +# allele frequencies: +hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy +hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster +hgc.ghostscriptPath=/usr/bin/ghostscript + +#hgHubConnect +hgHubConnect.cacheDir=../trash/hgHubConnect/hubCrawlPublic + +# Bottleneck info for taming hyperactive web bots +#bottleneck.host=localhost +#bottleneck.port=17776 + +# location of grepIndex files +grepIndex.genbank=/gbdb/genbank/grepIndex +grepIndex.default=/gbdb + +# wiki items to use the login system in the genomewiki for +# session management +login.systemName=hgLogin CGI +wiki.host=genome.ucsc.edu +wiki.userNameCookie=wikidb_mw1_UserName +wiki.loggedInCookie=wikidb_mw1_UserID + +# wiki items used by the wiki track to allow editing and fetching +# pages from the genomewiki +# wikiTrack function turned on 2009, set read-only June 2012 +#wikiTrack.readOnly=yes +# URL is the wiki location for the article pages +#wikiTrack.URL=http://genomewiki.ucsc.edu +# browser is the site to create links to for new wiki articles +##wikiTrack.browser=genome.soe.ucsc.edu +# List of wiki user names that have super user edit privileges +# to wiki track items. Currently this is only a delete item privilege. +# A comma separated listing of Wiki user names. +#wikiTrack.editors=Hiram +# List of databases to enable the wikiTrack function +#wikiTrack.dbList=hg18,mm9,hg19 +# session cookie is used during wiki page edits +#wiki.sessionCookie=wikidb_mw1__session + +# Comment out to turn off survey link in hgTracks +# survey=on + +udc.cacheDir=../trash/udcCache + +# log stack dumps +browser.dumpStack=on + +browser.node=3 + +# because Galt told us to do it 04/04/11 +signalsHandler=on + +# Transient setting that activates link on hgTracks and +# hgGateway for ENCODE/modENCODE survey (March 2010). +# Change to survey=off (or remove survey setting) to retire the survey. +#survey=http://www.surveymonkey.com/s/XV666V5 +#surveyLabel=Take ENCODE Survey +#survey=http://genome.ucsc.edu/goldenPath/help/image.html +#surveyLabel=
Trouble viewing the browser? Reload this web page. + +# Parallel fetching of remote network resources using bigDataUrl +# such as trackHubs and customTracks +# how many threads to use (set to 0 to disable) +parallelFetch.threads=100 +# how long to wait in seconds for parallel fetch to finish +parallelFetch.timeout=90 + +#Parameters for suggestion form +suggest.mailSignature=UCSC Genome Browser Staff +suggest.mailReturnAddr=genome-www@soe.ucsc.edu +suggest.browserName=UCSC Genome Browser + +# No Sql Injection settings +# values for level are ignore, logOnly, warn, abort +noSqlInj.level=abort +# values for dumpStack are on, off +noSqlInj.dumpStack=on + +#survey=on +#survey=https://www.surveymonkey.com/r/QYVSXKW +#surveyLabel=Take our feedback survey! + +# Display phylogenetic tree in hgGateway (URL relative to cgi-bin) +hgGateway.dbDbTaxonomy=../js/dbDbTaxonomy.js + +# Added this line by request from jcasper (05/11/16) +cramRef=/data/userdata/cramCache + +# Added as a test requested by Chris Lee +# useBlatBigPsl=on + +# The following turns on short links for hgSession, allowing the redirect. +# Commented on 12/21/18 by request from dschmelt +#hgSession.shortLink=on