a0f08908b43bb766a8d71873dd7e0823574642a8
jcasper
  Sun Jan 27 01:11:49 2019 -0800
Installing updated hg.conf files from UCSC servers

diff --git confs/asia.hg.conf confs/asia.hg.conf
index 339b84c..c80c3fe 100644
--- confs/asia.hg.conf
+++ confs/asia.hg.conf
@@ -1,122 +1,123 @@
 #
 # This file is installed and updated by cfengine. Do not make changes here!
 # The original file is on kkstore, under the directory:
 #    kkstore:/var/cfengine/files/RR/data/apache/cgi-bin/hg.conf
 # Make changes there!
 #
 # Config file for the UCSC Human Genome server
 #
 # the format is in the form of name/value pairs
 # written 'name=value' (note that there is no space between
 # the name and its value. Also, no blank lines should be in
 # this file
 ###########################################################
 
 include hg.conf.private
 
 # trackDb table to use
 db.trackDb=trackDb
 # Comment out to disable new double/query insert highlighting options:
 browser.indelOptions=on
 
 #  /data/tmp is the default tmpdir location, change this if desired elsewhere.
 #  What you want is for it to be on a local filesystem, and it must be
 #  read/write/delete enabled for the Apache browser effective user
 
 
 # Programs required for per-SNP geographic maps of HGDP population
 # allele frequencies:
 hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy
 hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster
 hgc.ghostscriptPath=/usr/bin/ghostscript
 
 #hgHubConnect
 hgHubConnect.cacheDir=../trash/hgHubConnect/hubCrawlPublic
 
 # Bottleneck info for taming hyperactive web bots
 #bottleneck.host=localhost
 #bottleneck.port=17776
 
 # location of grepIndex files
 grepIndex.genbank=/gbdb/genbank/grepIndex
 grepIndex.default=/gbdb
 
 # wiki items to use the login system in the genomewiki for
 #       session management
 login.systemName=hgLogin CGI
 wiki.host=genome.ucsc.edu
+login.acceptIdx=no
 wiki.userNameCookie=wikidb_mw1_UserName
 wiki.loggedInCookie=wikidb_mw1_UserID
 
 # wiki items used by the wiki track to allow editing and fetching
 #       pages from the genomewiki
 # wikiTrack function turned on 2009, set read-only June 2012
 #wikiTrack.readOnly=yes
 #  URL is the wiki location for the article pages
 #wikiTrack.URL=http://genomewiki.ucsc.edu
 #  browser is the site to create links to for new wiki articles
 ##wikiTrack.browser=genome.soe.ucsc.edu
 #  List of wiki user names that have super user edit privileges
 #       to wiki track items.  Currently this is only a delete item privilege.
 #       A comma separated listing of Wiki user names.
 #wikiTrack.editors=Hiram
 #  List of databases to enable the wikiTrack function
 #wikiTrack.dbList=hg18,mm9,hg19
 # session cookie is used during wiki page edits
 #wiki.sessionCookie=wikidb_mw1__session
 
 # Comment out to turn off survey link in hgTracks
 # survey=on
 
 udc.cacheDir=../trash/udcCache
 
 # log stack dumps
 browser.dumpStack=on
 
 browser.node=3
 
 # because Galt told us to do it 04/04/11
 signalsHandler=on
 
 # Transient setting that activates link on hgTracks and
 # hgGateway for ENCODE/modENCODE survey (March 2010).
 # Change to survey=off (or remove survey setting) to retire the survey.
 #survey=http://www.surveymonkey.com/s/XV666V5
 #surveyLabel=Take ENCODE Survey
 #survey=http://genome.ucsc.edu/goldenPath/help/image.html
 #surveyLabel=<BR>Trouble viewing the browser? Reload this web page.
 
 # Parallel fetching of remote network resources using bigDataUrl 
 #    such as trackHubs and customTracks
 # how many threads to use (set to 0 to disable)
 parallelFetch.threads=100
 # how long to wait in seconds for parallel fetch to finish
 parallelFetch.timeout=90
 
 #Parameters for suggestion form
 suggest.mailSignature=UCSC Genome Browser Staff
 suggest.mailReturnAddr=genome-www@soe.ucsc.edu
 suggest.browserName=UCSC Genome Browser
 
 # No Sql Injection settings
 # values for level are ignore, logOnly, warn, abort
 noSqlInj.level=abort
 # values for dumpStack are on, off
 noSqlInj.dumpStack=on
 
 #survey=on
 #survey=https://www.surveymonkey.com/r/QYVSXKW
 #surveyLabel=Take our feedback survey!
 
 # Display phylogenetic tree in hgGateway (URL relative to cgi-bin)
 hgGateway.dbDbTaxonomy=../js/dbDbTaxonomy.js
 
 # Added this line by request from jcasper (05/11/16)
 cramRef=/data/userdata/cramCache
 
 # Added as a test requested by Chris Lee
 # useBlatBigPsl=on
 
 # The following turns on short links for hgSession, allowing the redirect.
-# Commented on 12/21/18 by request from dschmelt
-#hgSession.shortLink=on
+# Uncommented on 1/23/19 by request from Brian Lee
+hgSession.shortLink=on